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AT3G51040.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.935
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RTE1-homolog
Curator
Summary (TAIR10)
Encodes a protein of 231 amino acids with 51% identity to RTE1 over 209 amino acids.
Computational
Description (TAIR10)
RTE1-homolog (RTH); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF778 (InterPro:IPR008496); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF778) (TAIR:AT2G26070.1); Has 294 Blast hits to 294 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
Protein Annotations
BioGrid:9586eggNOG:ENOG4111G1SeggNOG:KOG3150EMBL:AL132980EMBL:AY045821EMBL:AY091362EMBL:CP002686
EnsemblPlants:AT3G51040EnsemblPlants:AT3G51040.1EnsemblPlants:AT3G51040.2EnsemblPlants:AT3G51040.3entrez:824268GeneID:824268Genevisible:Q9SD42
GO:GO:0016021Gramene:AT3G51040.1Gramene:AT3G51040.2Gramene:AT3G51040.3hmmpanther:PTHR20921hmmpanther:PTHR20921:SF1HOGENOM:HOG000231333
InParanoid:Q9SD42InterPro:IPR008496KEGG:ath:AT3G51040OMA:TWLPFLIPANTHER:PTHR20921PaxDb:Q9SD42Pfam:PF05608
Pfam:Q9SD42PhylomeDB:Q9SD42PIR:T45735PRIDE:Q9SD42PRO:PR:Q9SD42ProteinModelPortal:Q9SD42Proteomes:UP000006548
RefSeq:NP_001078268.1RefSeq:NP_190673.1RefSeq:NP_974408.1STRING:3702.AT3G51040.1TAIR:AT3G51040tair10-symbols:RTHTMHMM:TMhelix
UniGene:At.851UniProt:Q9SD42
Coordinates (TAIR10) chr3:-:18952281..18953060
Molecular Weight (calculated) 26162.70 Da
IEP (calculated) 7.41
GRAVY (calculated) 0.05
Length 231 amino acids
Sequence (TAIR10)
(BLAST)
001: MGETATDSEH RMMIGLSDPM KIDPKRDRFP CCIVWTPLPF ISWLVPFIGH VGICREDGVI LDFAGPNFVC VDNFAFGAVS RYIQINKEME SSRSSSSGMF
101: NGERRYEQEE DSHEKEPTWD DALRKSTQEY QHHSYNILTC NCHSFVANNL NRLSIKSGGW NVVNLATLVL FKGRWVNKTA IVKSLLPPLI VYTIGILLGG
201: WTFIASCSIL VVLLTGWFII GTYCFKKLIQ L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)