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AT3G50970.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.975
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : dehydrin family protein
Curator
Summary (TAIR10)
Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer freeze tolerance. Located in membranes. mRNA upregulated by water deprivation and abscisic acid.
Computational
Description (TAIR10)
LOW TEMPERATURE-INDUCED 30 (LTI30); CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); BEST Arabidopsis thaliana protein match is: dehydrin xero 1 (TAIR:AT3G50980.1); Has 2604 Blast hits to 1055 proteins in 149 species: Archae - 0; Bacteria - 4; Metazoa - 72; Fungi - 7; Plants - 2511; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Protein Annotations
BioGrid:9579DisProt:DP00658DNASU:824261EMBL:AL132980EMBL:AY054260EMBL:AY132003EMBL:CP002686
EMBL:U19536EMBL:X77613EMBL:Z18121EnsemblPlants:AT3G50970EnsemblPlants:AT3G50970.1entrez:824261GeneID:824261
Genevisible:P42758GO:GO:0005829GO:GO:0009409GO:GO:0009414GO:GO:0009631GO:GO:0009737GO:GO:0016020
GO:GO:0050832Gramene:AT3G50970.1hmmpanther:PTHR33346HOGENOM:HOG000154871InParanoid:P42758InterPro:IPR000167InterPro:IPR030513
KEGG:ath:AT3G50970OMA:MTEKVMEPaxDb:P42758Pfam:P42758Pfam:PF00257PhylomeDB:P42758PIR:S52654
PIR:S63689PRIDE:P42758PRO:PR:P42758PROSITE:PS00823Proteomes:UP000006548RefSeq:NP_190666.1scanprosite:PS00823
STRING:3702.AT3G50970.1TAIR:AT3G50970tair10-symbols:LTI30tair10-symbols:XERO2UniGene:At.5388UniProt:P42758
Coordinates (TAIR10) chr3:+:18940825..18941406
Molecular Weight (calculated) 20910.60 Da
IEP (calculated) 10.07
GRAVY (calculated) -1.17
Length 193 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSHQNQTGV QKKGITEKIM EKLPGHHGPT NTGVVHHEKK GMTEKVMEQL PGHHGATGTG GVHHEKKGMT EKVMEQLPGH HGSHQTGTNT TYGTTNTGGV
101: HHEKKSVTEK VMEKLPGHHG SHQTGTNTAY GTNTNVVHHE KKGIAEKIKE QLPGHHGTHK TGTTTSYGNT GVVHHENKST MDKIKEKLPG GHH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)