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AT3G50930.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:22923678 (2012): mitochondrion
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:21433285 (2011): plasma membrane
  • PMID:21296373 (2011): mitochondrion
  • PMID:16618929 (2006): unclear
  • PMID:15276431 (2004): mitochondrion
  • PMID:14671022 (2004): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cytochrome BC1 synthesis
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
cytochrome BC1 synthesis (BCS1); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G50940.1); Has 21434 Blast hits to 19763 proteins in 2733 species: Archae - 1352; Bacteria - 7111; Metazoa - 3538; Fungi - 2773; Plants - 2474; Viruses - 30; Other Eukaryotes - 4156 (source: NCBI BLink).
Protein Annotations
EC:3.6.1.3eggNOG:COG0465eggNOG:KOG0743EMBL:AF370607EMBL:AL049862EMBL:AY064981EMBL:AY087160
EMBL:AY102119EMBL:BT002611EMBL:CP002686EnsemblPlants:AT3G50930EnsemblPlants:AT3G50930.1entrez:824257Gene3D:3.40.50.300
GeneID:824257Genevisible:Q8VZG2GO:GO:0002237GO:GO:0005524GO:GO:0005739GO:GO:0005740GO:GO:0005741
GO:GO:0008219GO:GO:0009411GO:GO:0009617GO:GO:0009626GO:GO:0009863GO:GO:0016021GO:GO:0016887
GO:GO:0042802Gramene:AT3G50930.1hmmpanther:PTHR23070hmmpanther:PTHR23070:SF24HOGENOM:HOG000237995InterPro:IPR003593InterPro:IPR003959
InterPro:IPR003960InterPro:IPR025753InterPro:IPR027417iPTMnet:Q8VZG2KEGG:ath:AT3G50930ncoils:CoilOMA:QHTITIE
PaxDb:Q8VZG2Pfam:PF00004Pfam:PF14363PhylomeDB:Q8VZG2PIR:T08414PROSITE:PS00674ProteinModelPortal:Q8VZG2
Proteomes:UP000006548RefSeq:NP_190662.2scanprosite:PS00674SMART:SM00382SMR:Q8VZG2STRING:3702.AT3G50930.1SUPFAM:SSF52540
TAIR:AT3G50930tair10-symbols:BCS1UniGene:At.23776UniProt:Q8VZG2
Coordinates (TAIR10) chr3:+:18929817..18931547
Molecular Weight (calculated) 66139.80 Da
IEP (calculated) 6.74
GRAVY (calculated) -0.56
Length 576 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGSKLLPCV HKSPVPTSHQ LYINYEILGL TKLKKHKYTQ NKMSSSDSSS AESRLATAKT VLTTAASVAA TAMLARSLVQ DYLPDEVHHY ISYGFRSIFG
101: YFSSQMTIII EEFEGFAHNE VFEAAEAYLA TKISPSNKRI KVSKHEKENN YNVTVERDEE VVDTYNGVKF QWILHCRHVE SKHFHNPRDL NSTLRSEVRS
201: FELNFHKKFK DVALESYLPF MVKRATLMKQ EKKTLKIFTL SPENMYGNYS DAWTSVTLDH PSTFKTLAMD SDVKTSVMED LDKFVKRRDF YKRVGKAWKR
301: GYLLYGPPGT GKSSLIAAMA NHLNFDIYDL ELTAVNNNSE LRRLLIATAN RSILIVEDID CSLELKDRTS DEPPRESDDI EDPRYKKVTL SGLLNFIDGL
401: WSSCGDERII IFTTNYKEKL DAALLRPGRM DMHIHMSYCT PSTFKALALN YLEIKEHRLF SKIEEGIEAT EVTPAEVAEQ LMRNDSVDKV LEGLIEFLKV
501: KKIENEQDKA KTEKQELENK KKTKEGTDSV VKKEVDEQLV RNDRVDKVLE GLVELLKAKK IEDDQDKAKH EEVEQH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)