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AT3G50870.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : GATA type zinc finger transcription factor family protein
Curator
Summary (TAIR10)
Encodes a GATA factort transcriptional regulator required to position the proembryo boundary in the early embryo.
Computational
Description (TAIR10)
MONOPOLE (MNP); CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 19 (TAIR:AT4G36620.1); Has 2164 Blast hits to 2065 proteins in 231 species: Archae - 0; Bacteria - 0; Metazoa - 372; Fungi - 903; Plants - 779; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5641eggNOG:KOG1601EMBL:AB493644EnsemblPlants:AT3G50870EnsemblPlants:AT3G50870.1entrez:824251ExpressionAtlas:C0SVE1
Gene3D:3.30.50.10GeneID:824251GO:GO:0003700GO:GO:0008270GO:GO:0043565Gramene:AT3G50870.1hmmpanther:PTHR10071
hmmpanther:PTHR10071:SF156InterPro:IPR000679InterPro:IPR013088KEGG:ath:AT3G50870OMA:CHSCGMFPaxDb:C0SVE1Pfam:PF00320
Pfam:Q8LC79Pfscan:PS50114PhylomeDB:C0SVE1PROSITE:PS00344PROSITE:PS50114ProteinModelPortal:C0SVE1RefSeq:NP_566939.1
scanprosite:PS00344SMART:SM00401SMR:C0SVE1SMR:Q8LC79STRING:3702.AT3G50870.1SUPFAM:SSF57716TAIR:AT3G50870
tair10-symbols:GATA18tair10-symbols:HANtair10-symbols:MNPUniGene:At.27761UniProt:C0SVE1UniProt:Q8LC79
Coordinates (TAIR10) chr3:+:18911112..18912369
Molecular Weight (calculated) 31833.20 Da
IEP (calculated) 8.01
GRAVY (calculated) -0.83
Length 295 amino acids
Sequence (TAIR10)
(BLAST)
001: MMQTPYTTST QGQYCHSCGM FHHHSQSCCY NNNNNSNAGS YSMVFSMQNG GVFEQNGEDY HHSSSLVDCT LSLGTPSTRL CEEDEKRRRS TSSGASSCIS
101: NFWDLIHTKN NNSKTAPYNN VPSFSANKPS RGCSGGGGGG GGGGGGDSLL ARRCANCDTT STPLWRNGPR GPKSLCNACG IRFKKEERRT TAATGNTVVG
201: AAPVQTDQYG HHNSGYNNYH AATNNNNNNG TPWAHHHSTQ RVPCNYPANE IRFMDDYGSG VANNVESDGA HGGVPFLSWR LNVADRASLV HDFTR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)