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AT3G50780.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.883
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT1G63850.1); Has 298 Blast hits to 298 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 287; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
BioGrid:9560eggNOG:ENOG410IKSHeggNOG:ENOG410YC9BEMBL:AL049862EMBL:BT002970EMBL:BT005113EMBL:CP002686
EnsemblPlants:AT3G50780EnsemblPlants:AT3G50780.1entrez:824242GeneID:824242Genevisible:Q9SVM0GO:GO:0016567Gramene:AT3G50780.1
hmmpanther:PTHR31060hmmpanther:PTHR31060:SF5HOGENOM:HOG000240444InParanoid:Q9SVM0IntAct:Q9SVM0KEGG:ath:AT3G50780OMA:MWASQQE
PaxDb:Q9SVM0Pfam:Q9SVM0PhylomeDB:Q9SVM0PIR:T08399PRIDE:Q9SVM0PRO:PR:Q9SVM0ProteinModelPortal:Q9SVM0
Proteomes:UP000006548RefSeq:NP_190647.1STRING:3702.AT3G50780.1TAIR:AT3G50780UniGene:At.35455UniGene:At.68391UniPathway:UPA00143
UniProt:Q9SVM0
Coordinates (TAIR10) chr3:-:18875662..18877341
Molecular Weight (calculated) 58484.30 Da
IEP (calculated) 7.77
GRAVY (calculated) -0.32
Length 520 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEIKNAKVE QRQTKIRNVP VAVTPEGFWC CPSPVAFQKT LKSHNSLTKH KQSSPALQPP KPEKKPSSTT IRSVIASDET QQNLGSFDTV HSIAVPATVQ
101: ERPQRQKVET LPRKVAIEFG EPGSSDAKVI LVGKQGFCVK LSVHKKVLVD HSCFFAKKLA EKDSVFACLE IESCEDAELY VETIGLMYCK DMKQRLMKQN
201: VSRVLRVLKV AELLGFSSCI QSCLDYLEAV PWVGEEEEEK VISSILRLKT EGVGVTPVLK RVASNAVDPP KETLSRIIEL VLRSKEEKSR REMKSIVLKL
301: LREQNGANVA DNFNDTIYSS CQTCLDSVLS LFKQASEGEK PETDTKQIAV EADNLTWLLD VLAERQAAEE FSVTWANQKE LALLHEKLPL MSRYHISRVT
401: SRLFIGIGRG ELLPSKDTRL LLLTTWLQPL FNDYNWLQHG CRSFDGKLVE EGIGRTILTL PLEDQQSILL SWLGSFLNGG DGCPNLQRAF EVWWRRSFIR
501: PYSDRQANGS CQTDSTSKEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)