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AT3G50670.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : U1 small nuclear ribonucleoprotein-70K
Curator
Summary (TAIR10)
Encodes U1 snRNP 70K
Computational
Description (TAIR10)
U1 small nuclear ribonucleoprotein-70K (U1-70K); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U1 small nuclear ribonucleoprotein of 70kDa MW N-terminal (InterPro:IPR022023), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G43370.1); Has 287 Blast hits to 284 proteins in 72 species: Archae - 6; Bacteria - 66; Metazoa - 0; Fungi - 0; Plants - 156; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).
Protein Annotations
BioGrid:9548eggNOG:COG0724eggNOG:KOG0113EMBL:AL132979EMBL:AY039874EMBL:AY094003EMBL:CP002686
EMBL:M93439EMBL:U52909EMBL:U52910EnsemblPlants:AT3G50670EnsemblPlants:AT3G50670.1entrez:824230Gene3D:3.30.70.330
GeneID:824230Genevisible:Q42404GO:GO:0000166GO:GO:0000243GO:GO:0000398GO:GO:0003729GO:GO:0005634
GO:GO:0005685GO:GO:0016607GO:GO:0030619GO:GO:0071004GO:GO:0071011HOGENOM:HOG000236289InParanoid:Q42404
IntAct:Q42404InterPro:IPR000504InterPro:IPR012677InterPro:IPR022023iPTMnet:Q42404KEGG:ath:AT3G50670KO:K11093
OMA:KPDFRDMPaxDb:Q42404Pfam:PF00076Pfam:PF12220Pfam:Q42404Pfscan:PS50102PhylomeDB:Q42404
PIR:S71367PRIDE:Q42404PRO:PR:Q42404PROSITE:PS50102ProteinModelPortal:Q42404Proteomes:UP000006548Reactome:R-ATH-72163
RefSeq:NP_190636.1RefSeq:NP_850676.1SMART:SM00360SMR:Q42404STRING:3702.AT3G50670.1SUPFAM:SSF54928TAIR:AT3G50670
tair10-symbols:U1-70Ktair10-symbols:U1SNRNPUniGene:At.25571UniProt:Q42404
Coordinates (TAIR10) chr3:-:18826476..18829492
Molecular Weight (calculated) 50391.10 Da
IEP (calculated) 9.83
GRAVY (calculated) -1.76
Length 427 amino acids
Sequence (TAIR10)
(BLAST)
001: MGDSGDPFLR NPNAAVQARA KVQNRANVLQ LKLMGQSHPT GLTNNLLKLF EPRPPLEYKP PPEKRKCPPY TGMAQFVSNF AEPGDPEYAP PKPEVELPSQ
101: KRERIHKLRL EKGVEKAAED LKKYDPNNDP NATGDPYKTL FVSRLNYESS ESKIKREFES YGPIKRVHLV TDQLTNKPKG YAFIEYMHTR DMKAAYKQAD
201: GQKIDGRRVL VDVERGRTVP NWRPRRLGGG LGTSRVGGGE EIVGEQQPQG RTSQSEEPSR PREEREKSRE KGKERERSRE LSHEQPRERS RDRPREDKHH
301: RDRDQGGRDR DRDSRRDRDR TRDRGDRDRR DRDRGRDRTS RDHDRDRSRK KERDYEGGEY EHEGGGRSRE RDAEYRGEPE ETRGYYEDDQ GDTDRYSHRY
401: DKMEEDDFRY EREYKRSKRS ESREYVR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)