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AT3G50650.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : GRAS family transcription factor
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GRAS family transcription factor; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT5G66770.1); Has 2907 Blast hits to 2857 proteins in 413 species: Archae - 0; Bacteria - 24; Metazoa - 184; Fungi - 97; Plants - 2517; Viruses - 13; Other Eukaryotes - 72 (source: NCBI BLink).
Protein Annotations
BioGrid:9546eggNOG:ENOG410IJHSeggNOG:ENOG410YBEMEMBL:AF036304
EMBL:AK229252EMBL:AL132979EMBL:CP002686EnsemblPlants:AT3G50650
EnsemblPlants:AT3G50650.1entrez:824228ExpressionAtlas:Q9SCR0GeneID:824228
Genevisible:Q9SCR0GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0006355Gramene:AT3G50650.1hmmpanther:PTHR31636hmmpanther:PTHR31636:SF65
HOGENOM:HOG000240374InParanoid:Q9SCR0InterPro:IPR005202KEGG:ath:AT3G50650
ncoils:CoilOMA:WMESLINPaxDb:Q9SCR0Pfam:PF03514
Pfam:Q9SCR0Pfscan:PS50985PhylomeDB:Q9SCR0PIR:T46142
PIR:T51238PRIDE:Q9SCR0PRO:PR:Q9SCR0PROSITE:PS50985
ProteinModelPortal:Q9SCR0Proteomes:UP000006548RefSeq:NP_190634.1STRING:3702.AT3G50650.1
TAIR:AT3G50650UniGene:At.42939UniProt:C0SVE0UniProt:Q9SCR0
Coordinates (TAIR10) chr3:-:18806472..18808100
Molecular Weight (calculated) 60782.20 Da
IEP (calculated) 4.86
GRAVY (calculated) -0.47
Length 542 amino acids
Sequence (TAIR10)
(BLAST)
001: MAYMCTDSGN LMAIAQQLIK QKQQQQSQHQ QQEEQEQEPN PWPNPSFGFT LPGSGFSDPF QVTNDPGFHF PHLEHHQNAA VASEEFDSDE WMESLINGGD
101: ASQTNPDFPI YGHDPFVSFP SRLSAPSYLN RVNKDDSASQ QLPPPPASTA IWSPSPPSPQ HPPPPPPQPD FDLNQPIFKA IHDYARKPET KPDTLIRIKE
201: SVSESGDPIQ RVGYYFAEAL SHKETESPSS SSSSSLEDFI LSYKTLNDAC PYSKFAHLTA NQAILEATNQ SNNIHIVDFG IFQGIQWSAL LQALATRSSG
301: KPTRIRISGI PAPSLGDSPG PSLIATGNRL RDFAAILDLN FEFYPVLTPI QLLNGSSFRV DPDEVLVVNF MLELYKLLDE TATTVGTALR LARSLNPRIV
401: TLGEYEVSLN RVEFANRVKN SLRFYSAVFE SLEPNLDRDS KERLRVERVL FGRRIMDLVR SDDDNNKPGT RFGLMEEKEQ WRVLMEKAGF EPVKPSNYAV
501: SQAKLLLWNY NYSTLYSLVE SEPGFISLAW NNVPLLTVSS WR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)