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AT3G50640.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.899
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66800.1); Has 67 Blast hits to 67 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JT7FeggNOG:ENOG4110848EMBL:AK228242EMBL:AL132979EMBL:BT004767EMBL:CP002686EnsemblPlants:AT3G50640
EnsemblPlants:AT3G50640.1entrez:824227GeneID:824227Gramene:AT3G50640.1hmmpanther:PTHR31722hmmpanther:PTHR31722:SF5HOGENOM:HOG000239520
KEGG:ath:AT3G50640OMA:ETSHVHRPhylomeDB:Q9SCR1PIR:T46141Proteomes:UP000006548RefSeq:NP_190633.1TAIR:AT3G50640
UniGene:At.35469UniProt:Q9SCR1
Coordinates (TAIR10) chr3:-:18804027..18804639
Molecular Weight (calculated) 18605.00 Da
IEP (calculated) 7.73
GRAVY (calculated) -0.50
Length 166 amino acids
Sequence (TAIR10)
(BLAST)
001: MARLEMHNSM NGAARISFSN EFVEIRSEKS NAKSNNINSR SSFSMPSADF AFSVTDYSMI PADEIFLKGK ILPFKETSHV HRTLGEELLT EEEGSMVDGN
101: TFSLRPILLS SSSFSTKGTW RELLGLKRTH VRSKKTDKVN EEVLSQDHKI ISGNVATREC QVADTR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)