suba logo
AT3G50560.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
mitochondrion 0.908
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT5G10050.1); Has 28315 Blast hits to 28305 proteins in 2489 species: Archae - 298; Bacteria - 21162; Metazoa - 1441; Fungi - 797; Plants - 407; Viruses - 0; Other Eukaryotes - 4210 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1028eggNOG:ENOG410ITW5EMBL:AF439850EMBL:AY125567EMBL:CP002686EnsemblPlants:AT3G50560EnsemblPlants:AT3G50560.1
entrez:824220Gene3D:3.40.50.720GeneID:824220GO:GO:0016491Gramene:AT3G50560.1hmmpanther:PTHR24322hmmpanther:PTHR24322:SF315
IntAct:Q943Z4InterPro:IPR002347InterPro:IPR016040KEGG:ath:AT3G50560OMA:HACDATDPANTHER:PTHR24322Pfam:PF00106
PhylomeDB:Q943Z4PRINTS:PR00081Proteomes:UP000006548RefSeq:NP_566935.1SMR:Q943Z4STRING:3702.AT3G50560.1SUPFAM:SSF51735
TAIR:AT3G50560UniGene:At.26622UniProt:Q943Z4
Coordinates (TAIR10) chr3:-:18761247..18763835
Molecular Weight (calculated) 29348.00 Da
IEP (calculated) 6.78
GRAVY (calculated) -0.01
Length 272 amino acids
Sequence (TAIR10)
(BLAST)
001: MMRNVGSSSS GSKGIAAVVG VGPKLGRSIA RKFAHEGYTV AILARDLGRL SRVAEEIARE EKAQVFAIRI DCADPRSVRE AFEGVLSLGF VEVLVYNAYH
101: SSYASHHPTS FTHIPFQSFQ TSISVSVFAA FLCAQQVTPG MMEKGKGTIL FTGCSASLNG IAGFSELCCG KFALRALSQC LAKEYQAFGI HVAHVIIDGV
201: VGPPRETNIP PRGMVAEQSF NVGGEDGEGE GESSGVMGMD PDVLAQTYWY LHVQDRRAWT HELDIRPSNP NF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)