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AT3G50500.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.905
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:21166475 (2011): cytosol
  • PMID:18433157 (2008): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SNF1-related protein kinase 2.2
Curator
Summary (TAIR10)
encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Enzyme involved in the ABA signaling during seed germination, dormancy and seedling growth.
Computational
Description (TAIR10)
SNF1-related protein kinase 2.2 (SNRK2.2); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: in 7 processes; LOCATED IN: cytosol, nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Serine/threonine-protein kinase-like, plant (InterPro:IPR015740); BEST Arabidopsis thaliana protein match is: sucrose nonfermenting 1(SNF1)-related protein kinase 2.3 (TAIR:AT5G66880.1); Has 115487 Blast hits to 113731 proteins in 3342 species: Archae - 110; Bacteria - 13353; Metazoa - 42986; Fungi - 12252; Plants - 26670; Viruses - 490; Other Eukaryotes - 19626 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G50500-MONOMERBioCyc:ARA:GQT-1530-MONOMERBioGrid:9532DIP:DIP-48985NEC:2.7.11.1eggNOG:COG0515eggNOG:KOG0583
EMBL:AL133363EMBL:AY057591EMBL:AY087953EMBL:BT025246EMBL:CP002686EMBL:L05561EnsemblPlants:AT3G50500
EnsemblPlants:AT3G50500.1entrez:824214ExpressionAtlas:Q39192GeneID:824214Genevisible:Q39192GO:GO:0004674GO:GO:0005524
GO:GO:0009738gramene_plant_reactome:3899351gramene_plant_reactome:6876986gramene_plant_reactome:6877045gramene_plant_reactome:6877073gramene_plant_reactome:6877093hmmpanther:PTHR24343
hmmpanther:PTHR24343:SF169HOGENOM:HOG000233016InParanoid:Q39192IntAct:Q39192InterPro:IPR000719InterPro:IPR008271InterPro:IPR011009
InterPro:IPR017441iPTMnet:Q39192PaxDb:Q39192Pfam:PF00069Pfam:Q39192Pfscan:PS50011PhylomeDB:Q39192
PIR:S56718PRIDE:Q39192PRO:PR:Q39192PROSITE:PS00107PROSITE:PS00108PROSITE:PS50011ProteinModelPortal:Q39192
Proteomes:UP000006548Reactome:R-ATH-163680Reactome:R-ATH-200425Reactome:R-ATH-380972RefSeq:NP_190619.1scanprosite:PS00107scanprosite:PS00108
SMART:SM00220SMR:Q39192STRING:3702.AT3G50500.2SUPFAM:SSF56112TAIR:AT3G50500tair10-symbols:SNRK2-2tair10-symbols:SNRK2.2
tair10-symbols:SPK-2-2tair10-symbols:SRK2DUniGene:At.313UniProt:Q39192
Coordinates (TAIR10) chr3:-:18741805..18743904
Molecular Weight (calculated) 41209.10 Da
IEP (calculated) 4.47
GRAVY (calculated) -0.30
Length 362 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPATNSPIM PIDLPIMHDS DRYDFVKDIG SGNFGVARLM TDRVTKELVA VKYIERGEKI DENVQREIIN HRSLRHPNIV RFKEVILTPS HLAIVMEYAA
101: GGELYERICN AGRFSEDEAR FFFQQLISGV SYCHAMQICH RDLKLENTLL DGSPAPRLKI CDFGYSKSSV LHSQPKSTVG TPAYIAPEIL LRQEYDGKLA
201: DVWSCGVTLY VMLVGAYPFE DPQEPRDYRK TIQRILSVTY SIPEDLHLSP ECRHLISRIF VADPATRITI PEITSDKWFL KNLPGDLMDE NRMGSQFQEP
301: EQPMQSLDTI MQIISEATIP TVRNRCLDDF MADNLDLDDD MDDFDSESEI DVDSSGEIVY AL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)