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AT3G50430.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.993
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 54 Blast hits to 54 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 29; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHQ0eggNOG:ENOG410ZKEBEMBL:AK228667EMBL:BT005733EMBL:CP002686EnsemblPlants:AT3G50430EnsemblPlants:AT3G50430.1
entrez:824207GeneID:824207Gramene:AT3G50430.1hmmpanther:PTHR16057hmmpanther:PTHR16057:SF1InterPro:IPR024875InterPro:IPR029415
InterPro:IPR032794KEGG:ath:AT3G50430OMA:PENCLEGPANTHER:PTHR16057Pfam:PF14694Pfam:PF14695PhylomeDB:Q84TJ4
Proteomes:UP000006548RefSeq:NP_190612.3TAIR:AT3G50430UniGene:At.35493UniGene:At.66499UniProt:Q84TJ4
Coordinates (TAIR10) chr3:+:18713718..18716759
Molecular Weight (calculated) 74018.10 Da
IEP (calculated) 5.79
GRAVY (calculated) -0.13
Length 642 amino acids
Sequence (TAIR10)
(BLAST)
001: MATGNLASRL HLLIDLCVRQ FPEREEVTLP TKETEKDLLL SLSQVLREIQ SWRSEISCDK AVESREETVV DHDESADALY GPDSIEYLCL ERLVADLVCL
101: LGMENVHVKH LAGNILVEVS GCLVESGSQW DEFIRLLCEC LRLAVIYSFP IPAVGSETGF GSLDQCFFGS DVLKCKLEKA NWSTVSDIFR VLRNILKRLS
201: QEDNEEIFDV YLESVNSTLA KVPWCRLDTI FSHQHGSGER NFQGQSGNSE EATVFLGSFV QFLCSMVQQV HVVEDSDDFE PSYLILQKTI KLIPDLLRWC
301: QPKLKSQSGS CMSRYLGHKL LVLMIRLTDK SKIKCTILLS WLQYLQRDSQ GFLQHTLTKF KPVQDNCLEG SPFFVSLSDR EVNEMHSNHL QRLSVFLFLR
401: CSFTLIYSSR HNDKLCEFDC RKKGMAEMFK WIERQIPGNM FSDHRIYSKK NVEFSASFVR LFMHEDDLLF KVLLQLLSVP LHRQELPNVE GGSLEDEEQI
501: TLFRLSTLFN PVRLFCIFLS ELHYDHQVLL DYLISKDIGA SCAEYLLRCL RAVCDSWTLF VEFPFEGSTD APSPKRRKVL PETSEVEQNW RLHAQAFEDA
601: KDCLLSLQNS VVKLHQKKLF PYNPEALLRR LSRFHELCLS HE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)