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AT3G50410.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : OBF binding protein 1
Curator
Summary (TAIR10)
Arabidopsis Dof protein containing a single 51-amino acid zinc finger DNA-binding domain, which may play an important roles in plant growth and development.
Computational
Description (TAIR10)
OBF binding protein 1 (OBP1); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT5G66940.1); Has 1129 Blast hits to 1124 proteins in 68 species: Archae - 0; Bacteria - 9; Metazoa - 17; Fungi - 6; Plants - 1084; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Protein Annotations
BioGrid:9523eggNOG:ENOG410IX5EeggNOG:ENOG4111CPJEMBL:AL132976EMBL:CP002686EMBL:X89192EnsemblPlants:AT3G50410
EnsemblPlants:AT3G50410.1entrez:824205GeneID:824205Genevisible:Q39088GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0009733GO:GO:0009751GO:GO:0042545GO:GO:0044212GO:GO:0045787GO:GO:0045893
GO:GO:0046872Gramene:AT3G50410.1hmmpanther:PTHR31992hmmpanther:PTHR31992:SF12HOGENOM:HOG000005865InParanoid:Q39088IntAct:Q39088
InterPro:IPR003851KEGG:ath:AT3G50410OMA:PRDYHHAPaxDb:Q39088Pfam:PF02701Pfam:Q39088Pfscan:PS50884
PhylomeDB:Q39088PIR:T46072PRIDE:Q39088PRO:PR:Q39088ProDom:PD007478PROSITE:PS01361PROSITE:PS50884
ProteinModelPortal:Q39088Proteomes:UP000006548RefSeq:NP_190610.1scanprosite:PS01361STRING:3702.AT3G50410.1TAIR:AT3G50410tair10-symbols:OBP1
UniGene:At.20758UniProt:Q39088
Coordinates (TAIR10) chr3:+:18709872..18710633
Molecular Weight (calculated) 26383.60 Da
IEP (calculated) 8.49
GRAVY (calculated) -0.33
Length 253 amino acids
Sequence (TAIR10)
(BLAST)
001: MPTSDSGEPR RIAMKPNGVT VPISDQQEQL PCPRCDSSNT KFCYYNNYNF SQPRHFCKAC RRYWTHGGTL RDVPVGGGTR KSAKRSRTCS NSSSSSVSGV
101: VSNSNGVPLQ TTPVLFPQSS ISNGVTHTVT ESDGKGSALS LCGSFTSTLL NHNAAATATH GSGSVIGIGG FGIGLGSGFD DVSFGLGRAM WPFSTVGTAT
201: TTNVGSNGGH HAVPMPATWQ FEGLESNAGG GFVSGEYFAW PDLSITTPGN SLK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)