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AT3G50370.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.984
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:21433285 (2011): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; Has 27734 Blast hits to 16708 proteins in 1259 species: Archae - 81; Bacteria - 3434; Metazoa - 10876; Fungi - 2514; Plants - 987; Viruses - 212; Other Eukaryotes - 9630 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IF7TeggNOG:ENOG410YFF6EMBL:CP002686EnsemblPlants:AT3G50370EnsemblPlants:AT3G50370.1entrez:824199GeneID:824199
Gramene:AT3G50370.1hmmpanther:PTHR32093hmmpanther:PTHR32093:SF17InParanoid:F4J0L7iPTMnet:F4J0L7KEGG:ath:AT3G50370ncoils:Coil
OMA:PLIQFGQPaxDb:F4J0L7PRIDE:F4J0L7ProteinModelPortal:F4J0L7Proteomes:UP000006548RefSeq:NP_190606.6STRING:3702.AT3G50370.1
TAIR:AT3G50370UniGene:At.21914UniProt:F4J0L7
Coordinates (TAIR10) chr3:-:18676436..18683863
Molecular Weight (calculated) 236277.00 Da
IEP (calculated) 6.37
GRAVY (calculated) -0.87
Length 2156 amino acids
Sequence (TAIR10)
(BLAST)
0001: MDINLIISII NLEVMGGGEE VVDMAVEHER VDSSGSSFHS GGGIAGSGTR PASSGIGWSK PAATATDGDI GNHTGEGVTR GSNGLNTSLA SRVGAAEPME
0101: RAFHHVEKVA TLRGEDFPSL KASLPSASVS GQKQKEGLNQ KQKQAAGEDF SKEPRGVSGM SSSLVDMRPQ NQSGRSRLGN ELSESPSFSD GLHSSEHVRK
0201: KEYFAGPLPL VRLAPRSDWA DDERDTSHGL RDRDRDHGYS KNEPFWDRGF DLRPHVLPQK HAASNVFDKP GQRENEIAKS SLTQVRPVSG GGREANAWRV
0301: SSPLQNEGAN HNNYGARPSS RGREAAKKSN YVLSSSRENV WNNSGAREAP YQHGGRQPWN NNMDSSSNRG TYNRDGYGIE HQNRDKRSFF KSDKPHVEDP
0401: FMKDFGDSGF DVHDPFPVLG VTKKKKEALK QTEFHDPVRE SFEAELERVQ KMQEEERRRI IEEQERVIEL ARTEEEERLR LAREQDERQR RLEEEAREAA
0501: FRNEQERLEA TRRAEELRKS KEEEKHRLFM EEERRKQAAK QKLLELEEKI SRRQAEAAKG CSSSSTISED KFLDIVKEKD SADVVDWEDS ERMVDRITTS
0601: STLDLSVPMR SFESNATSQF SRDGSFGFPD RQKPTWRKED IESGSNSRFI PQNLENVPHS PQEEFFGTAG YLSAPSYFKP GFPEHSIDQS WRIPGDGRTH
0701: GRNYGMESES RENFGEQYGD PGWGQSQGRP RHGPYSPYPE KLYQNPEGDD YYPFGRPRYS VRQPRVLPPP QESRQKTSFR SEVEHPGPST SIGGINYSHK
0801: GRTNSTVLAN YIEDHHVLPG SGIDEHRRFD TKLTGRCDSQ SSLSVTSPPD SPVHLSHDDL DESADSTVLP TSRMGEDAGL LEKGGAPIIS SDIGKDSLMM
0901: ATGSVSCWDN EEWTLDSNER LQEQEEYDED EDGYQEEDKI HGVDENIDLA QELEEMHLDD KDSNLVLGFN EGVEVEIPSD DFEKCQRNSE STFPLHQHTV
1001: DSLDDERPSI ETSRGEQAAQ PAVVSDPLGM HNASRTFQGA ETTMQNLTVH PNIGRQSFEV ASKVDSTSNS TVSTHPVIPL HSAALHPSSL QTAIPPVSTT
1101: SAQMEEPVKF QFGLFSGPSL IPSPFPAIQI GSIQMPLPLH PQFGSSLTHM QQPQPPLIQF GQLPYTSPIS QGVLPPPHHS VVQANGLSTY ALNQNPGSLV
1201: TVQLGQGNSA NLLARNAATS VSHPQLSVLR RPTNVSDEGT LKNANLPPAR ASIEAAVSPQ KQPELSGNSQ LPSRKMSHGK SNFAERQSGY QVQTDTSAVR
1301: NSGLRSSGTA EVSRVDSGGN RRYRRQRVEF RVRESNWPSS DENRNGNGRA QTSTKIGSRK YVVSNKSQKQ ALDSSASGLN AMQKTVSGGS FENRLGKDAV
1401: VKNPLSPNSG QANLKRNMVS EKEIDAPLQI GIVRVFEQQG IEAPSDDDDF IEVRSKRQML NDRREQREKE IKEKSQAAKA FRKPRSTFQN NTTAARSNRS
1501: PPASRAANNK QFNPVSNRQT LAPIGTPSPK IDSHVDEKSG SNKSTQESSA LPVIPKNDQN PASGFVFSNK NKVLDNSHTP VGTWGNQLTY QPVMALTQSQ
1601: LDEAMKPVSH LSCVSVENGA NRISESNSTS TSVVPKNNTF SSSTSPINSL LAEGKIQFGA VTSSTVIPPC GGRTEKDSSL YFEKDNKHRN PSSTGIEICE
1701: AEAEAAASAI AVAAITNDET SGNALSTGSV LPVETKIYGG TELDDGAASG TVGGQTSRSK AEESLIVSLP ADLSVDTPIS LWPQLPSPHN SNQMITHFPP
1801: GPPHYPFYDV NPMLRGPIFA FGPHHDAGAT QSQSQKGPVT VSGPPTTWQQ QGHSGVDSFY APPAGFTGPF LTPPGAIPGV QGPPHMFVYN HFAPVGQFGG
1901: LSFMGTTYIP SGKQPDWKHN PNVSSSPVGG DGDVNNPNVA SMQCNIVPAS LQHLPMPMFD PSPFQSSSQE MPIRARWPYM PFSGPPTMQM QKQQEGTDGS
2001: NLPSPQFNNN MLPPPPPNRY PNVQASTVVD AMVDSSNAYS STTGAPPAKP TSTLSDPNSN NTQNPNGPGF KPPQQQQQQS SQEKNTQSQH VGGPSHHHQH
2101: QHHQNRRSGY HGRNQPMARE RGFPNNPKVK QIYVAKQTGN SCASASSTTT TTSPSI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)