AT3G50310.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.994 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : mitogen-activated protein kinase kinase kinase 20 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of MEKK subfamily | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
mitogen-activated protein kinase kinase kinase 20 (MAPKKK20); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: mitogen-activated protein kinase kinase kinase 19 (TAIR:AT5G67080.1); Has 114114 Blast hits to 112767 proteins in 3610 species: Archae - 125; Bacteria - 11707; Metazoa - 43224; Fungi - 11427; Plants - 28864; Viruses - 487; Other Eukaryotes - 18280 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:18648296..18649324 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37554.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.74 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 342 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEWVRGETIG FGTFSTVSTA TKSRNSGDFP ALIAVKSTDA YGAASLSNEK SVLDSLGDCP EIIRCYGEDS TVENGEEMHN LLLEYASRGS LASYMKKLGG 101: EGLPESTVRR HTGSVLRGLR HIHAKGFAHC DIKLANILLF NDGSVKIADF GLAMRVDGDL TALRKSVEIR GTPLYMAPEC VNDNEYGSAA DVWALGCAVV 201: EMFSGKTAWS VKEGSHFMSL LIRIGVGDEL PKIPEMLSEE GKDFLSKCFV KDPAKRWTAE MLLNHSFVTI DLEDDHRENF VVKVKDEDKV LMSPKCPFEF 301: DDWDSFTLDS NPSFDSPVER LGSLVSGSIP DWSVGGSWLT VR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)