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AT3G50310.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.995
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : mitogen-activated protein kinase kinase kinase 20
Curator
Summary (TAIR10)
member of MEKK subfamily
Computational
Description (TAIR10)
mitogen-activated protein kinase kinase kinase 20 (MAPKKK20); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: mitogen-activated protein kinase kinase kinase 19 (TAIR:AT5G67080.1); Has 114114 Blast hits to 112767 proteins in 3610 species: Archae - 125; Bacteria - 11707; Metazoa - 43224; Fungi - 11427; Plants - 28864; Viruses - 487; Other Eukaryotes - 18280 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G50310-MONOMEReggNOG:ENOG410XQGSeggNOG:KOG0198EMBL:AL132976EMBL:CP002686EnsemblPlants:AT3G50310EnsemblPlants:AT3G50310.1
entrez:824193GeneID:824193GO:GO:0000302GO:GO:0004674GO:GO:0005524GO:GO:0005737GO:GO:0006468
GO:GO:0007346GO:GO:0009409GO:GO:0009414GO:GO:0009651GO:GO:0023014GO:GO:0031098GO:GO:0032147
GO:GO:0048235Gramene:AT3G50310.1hmmpanther:PTHR24361hmmpanther:PTHR24361:SF334InterPro:IPR000719InterPro:IPR008271InterPro:IPR011009
InterPro:IPR017441KEGG:ath:AT3G50310OMA:GCAIVEMPfam:PF00069Pfscan:PS50011PIR:T45577PROSITE:PS00107
PROSITE:PS00108PROSITE:PS50011Proteomes:UP000006548Reactome:R-ATH-2559580RefSeq:NP_190600.1scanprosite:PS00107scanprosite:PS00108
SMART:SM00220STRING:3702.AT3G50310.1SUPFAM:SSF56112TAIR:AT3G50310tair10-symbols:MAPKKK20UniGene:At.35507UniProt:Q9SND6
Coordinates (TAIR10) chr3:-:18648296..18649324
Molecular Weight (calculated) 37554.50 Da
IEP (calculated) 4.74
GRAVY (calculated) -0.19
Length 342 amino acids
Sequence (TAIR10)
(BLAST)
001: MEWVRGETIG FGTFSTVSTA TKSRNSGDFP ALIAVKSTDA YGAASLSNEK SVLDSLGDCP EIIRCYGEDS TVENGEEMHN LLLEYASRGS LASYMKKLGG
101: EGLPESTVRR HTGSVLRGLR HIHAKGFAHC DIKLANILLF NDGSVKIADF GLAMRVDGDL TALRKSVEIR GTPLYMAPEC VNDNEYGSAA DVWALGCAVV
201: EMFSGKTAWS VKEGSHFMSL LIRIGVGDEL PKIPEMLSEE GKDFLSKCFV KDPAKRWTAE MLLNHSFVTI DLEDDHRENF VVKVKDEDKV LMSPKCPFEF
301: DDWDSFTLDS NPSFDSPVER LGSLVSGSIP DWSVGGSWLT VR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)