suba logo
AT3G50260.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cooperatively regulated by ethylene and jasmonate 1
Curator
Summary (TAIR10)
Encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. Involved in defense and freezing stress responses. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.
Computational
Description (TAIR10)
cooperatively regulated by ethylene and jasmonate 1 (CEJ1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: DREB and EAR motif protein 2 (TAIR:AT5G67190.1); Has 5544 Blast hits to 5466 proteins in 235 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5538; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JD5XeggNOG:ENOG410YR77EMBL:AL132976EMBL:AY045579EMBL:AY093792EMBL:CP002686EnsemblPlants:AT3G50260
EnsemblPlants:AT3G50260.1entrez:824188Gene3D:3.30.730.10GeneID:824188Genevisible:Q9SNE1GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0009409GO:GO:0009617GO:GO:0009873GO:GO:0010200GO:GO:0010941
GO:GO:0042742Gramene:AT3G50260.1hmmpanther:PTHR31729hmmpanther:PTHR31729:SF0HOGENOM:HOG000237624InParanoid:Q9SNE1InterPro:IPR001471
InterPro:IPR016177KEGG:ath:AT3G50260OMA:PELLPCTPaxDb:Q9SNE1Pfam:PF00847Pfam:Q9SNE1Pfscan:PS51032
PhylomeDB:Q9SNE1PIR:T45572PRINTS:PR00367PRO:PR:Q9SNE1PROSITE:PS51032ProteinModelPortal:Q9SNE1Proteomes:UP000006548
RefSeq:NP_190595.1SMART:SM00380SMR:Q9SNE1STRING:3702.AT3G50260.1SUPFAM:SSF54171TAIR:AT3G50260tair10-symbols:ATERF#011
tair10-symbols:CEJ1tair10-symbols:DEAR1UniGene:At.1423UniProt:Q9SNE1
Coordinates (TAIR10) chr3:+:18634687..18635148
Molecular Weight (calculated) 17008.50 Da
IEP (calculated) 10.30
GRAVY (calculated) -0.46
Length 153 amino acids
Sequence (TAIR10)
(BLAST)
001: MDAGVAVKAD VAVKMKRERP FKGIRMRKWG KWVAEIREPN KRSRLWLGSY STPEAAARAY DTAVFYLRGP TATLNFPELL PCTSAEDMSA ATIRKKATEV
101: GAQVDAIGAT VVQNNKRRRV FSQKRDFGGG LLELVDLNKL PDPENLDDDL VGK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)