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AT3G50250.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.880
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19270.1); Has 6 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AL132976EMBL:CP002686EnsemblPlants:AT3G50250EnsemblPlants:AT3G50250.1entrez:824187GeneID:824187GO:GO:0016021
Gramene:AT3G50250.1KEGG:ath:AT3G50250PIR:T45571Proteomes:UP000006548RefSeq:NP_190594.1STRING:3702.AT3G50250.1TAIR:AT3G50250
TMHMM:TMhelixUniGene:At.65268UniProt:Q9SNE2
Coordinates (TAIR10) chr3:-:18630032..18630478
Molecular Weight (calculated) 16013.10 Da
IEP (calculated) 11.92
GRAVY (calculated) 0.58
Length 148 amino acids
Sequence (TAIR10)
(BLAST)
001: MVVMVVVPAA AVIRRRRRWL SSDGDSGCPA TVVVRRRRRW LSGDGDGGCP AVAAAVFRQR RWLPAMVVMV VIPAASVFRR RWLWLSGGGG GCPAVEVVGR
101: RRRWLAGGGG YPAAVVVVVV SGVSGGDKIV IIYITYVILL GCFYWLVC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)