AT3G50230.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.995 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Leucine-rich repeat protein kinase family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, embryo, flower, cultured cell, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G67200.1); Has 114411 Blast hits to 77012 proteins in 2677 species: Archae - 82; Bacteria - 10430; Metazoa - 23497; Fungi - 4473; Plants - 64970; Viruses - 181; Other Eukaryotes - 10778 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:18620599..18623200 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 72765.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.91 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.11 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 660 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTLFFFYSLL FLLLLLRIST ASLPATNYFD SFLPSDAVAL LSFKSTADLD NKLLYSLTEP YDYCQWRGVD CSQDRVVRLI LDGVGLRGSF SPETLSRLDQ 101: LRVLSLENNS ISGSIPDLSP LVNLKTLTLS KNGFSGTLSS SILSLRRLTE LDLSFNNFSG EIPSGINALS RLSSLNLEFN RLNGTLPPLN LSSLISFNVS 201: SNNLTGLVPL TKTLLRFNAS SFSSNPGLCG EIINRSCGLH SSSPFFGSPK PNTTSSTSSA SSSEAPVIQS EQNGEAAMIV PPVVKKVKNG WLVLGFTIGL 301: ASLIVLGLCL VVFSLFIKNR REDYDDVIIT QPKREEENKE IKIQFQTTAP SSKKRIPRNG DLIFCGEGGG GGEAMYTVDQ LMRASAELLG RGSVGTTYKA 401: VMVNQMIVTV KRFAPSKTAI TSDLEFENQM EIVGGLKHPN LVPVKAYFQS NGERLVIYEY QPNGSLFNLI HGSRTSKAKP LHWTSCLKIA EDVAQALHYI 501: HQSSAKFHGN LKSTNILLGH DFEACVTDYC LSVLTDSSVP PNDPDISSYK APEIRKSTDS RPTSKCDVYS FGVFLLELLT GKTASRQPIM EPNDMLDWVR 601: AMRQEEERSK EENGLEMMTQ TACLCRVTSP EQRPTMKEVI KMIQEIKGSV VMTEENEKFL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)