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AT3G50210.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.996
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, iron ion binding; INVOLVED IN: aging, cellular response to starvation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT3G49630.1); Has 8820 Blast hits to 8765 proteins in 1007 species: Archae - 0; Bacteria - 1171; Metazoa - 121; Fungi - 1080; Plants - 4768; Viruses - 0; Other Eukaryotes - 1680 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G50210-MONOMERBioCyc:ARA:GQT-216-MONOMERBioCyc:ARA:GQT-217-MONOMEREC:1.14.11.-eggNOG:COG3491eggNOG:KOG0143EMBL:AK227940
EMBL:AK317326EMBL:AL132976EMBL:AY086558EMBL:BT006421EMBL:CP002686EnsemblPlants:AT3G50210EnsemblPlants:AT3G50210.1
EnsemblPlants:AT3G50210.3entrez:824183ExpressionAtlas:Q84MB6Gene3D:2.60.120.330GeneID:824183Genevisible:Q84MB6GO:GO:0005506
GO:GO:0051213gramene_pathway:1.14.11.23gramene_pathway:PWY-3101hmmpanther:PTHR10209hmmpanther:PTHR10209:SF144HOGENOM:HOG000276736InParanoid:Q84MB6
InterPro:IPR002283InterPro:IPR005123InterPro:IPR026992InterPro:IPR027443KEGG:ath:AT3G50210OMA:SIAFFYEPaxDb:Q84MB6
Pfam:PF03171Pfam:PF14226Pfam:Q84MB6Pfscan:PS51471PhylomeDB:Q84MB6PIR:T45567PRIDE:Q84MB6
PRINTS:PR00682PRO:PR:Q84MB6PROSITE:PS51471ProteinModelPortal:Q84MB6Proteomes:UP000006548RefSeq:NP_001030834.1RefSeq:NP_566930.1
SMR:Q84MB6STRING:3702.AT3G50210.1SUPFAM:SSF51197TAIR:AT3G50210UniGene:At.35519UniProt:Q84MB6
Coordinates (TAIR10) chr3:-:18614338..18616229
Molecular Weight (calculated) 37223.70 Da
IEP (calculated) 4.93
GRAVY (calculated) -0.27
Length 332 amino acids
Sequence (TAIR10)
(BLAST)
001: MATDFKSLPV IDISRLLLKC DDPDMAEDVG VAEVVQQLDK ACRDAGFFYV IGHGISEDVI NKVREITREF FKLPYEEKLK IKMTPAAGYR GYQRIGENVT
101: KGIPDIHEAI DCYREIKQGK YGDIGKVMEG PNQWPENPQE FKELMEEYIK LCTDLSRKIL RGISLALAGS PYEFEGKMAG DPFWVMRLIG YPGAEFTNGQ
201: PENDIGCGAH TDYGLLTLVN QDDDKTALQV RNLGGEWISA IPIPGSFVCN IGDMLKILSN GVYESTLHRV INNSPQYRVC VAFFYETNFD AVVEPLDICK
301: QKYPGGRGGC QVFKRAVYGE HLVSKVQTNF AM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)