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AT3G50170.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
peroxisome 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant protein of unknown function (DUF247)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant protein of unknown function (DUF247); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT3G50120.1); Has 1185 Blast hits to 1045 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1185; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IG14eggNOG:ENOG410YCQMEMBL:AL132976EMBL:AL132978EMBL:CP002686EnsemblPlants:AT3G50170EnsemblPlants:AT3G50170.1
entrez:824179ExpressionAtlas:Q9S7S4GeneID:824179GO:GO:0016021Gramene:AT3G50170.1hmmpanther:PTHR31549hmmpanther:PTHR31549:SF25
InterPro:IPR004158ncoils:CoilOMA:HIESSNHPfam:PF03140PhylomeDB:Q9S7S4PIR:T45563Proteomes:UP000006548
RefSeq:NP_190586.1TAIR:AT3G50170TMHMM:TMhelixUniGene:At.51001UniProt:Q9S7S4
Coordinates (TAIR10) chr3:-:18601857..18603738
Molecular Weight (calculated) 63149.80 Da
IEP (calculated) 8.31
GRAVY (calculated) -0.49
Length 541 amino acids
Sequence (TAIR10)
(BLAST)
001: MVLVNVHSDG QPIIINKDML TWYLLSLKLR QKFQTKNQHS EPVQDPNLHG LPEVTRPNQD QNVQNHKQSH SESGKEVVEE RPEETTGDSW VISIRDKLEQ
101: ADRDDDTTIW GKLCIYRVPH YLQENDKKSY FPQTVSLGPY HHGKKRLRPM ERHKWRALNK VLKRLKQRIE MYTNAMRELE EKARACYEGP ISLSRNEFTE
201: MLVLDGCFVL ELFRGTVEGF TEIGYARNDP VFAMRGLMHS IQRDMIMLEN QLPLFVLDRL LELQLGTQNQ TGIVAHVAVK FFDPLMPTGE ALTKPDQSKL
301: MNWLEKSLDT LGDKGELHCL DVFRRSLLQS SPTPNTRSLL KRLTRNTRVV DKRQQQLVHC VTELREAGVK FRKRKTDRFW DIEFKNGYLE IPKLLIHDGT
401: KSLFSNLIAF EQCHIESSNH ITSYIIFMDN LINSSEDVSY LHYCGIIEHW LGSDSEVADL FNRLCQEVVF DPKDSHLSRL SGDVNRYYNR KWNVLKATLT
501: HKYFNNPWAY FSFSAAVILL LLTLCQSFYA VYAYYKPNSK L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)