AT3G50140.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.982 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Plant protein of unknown function (DUF247) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Plant protein of unknown function (DUF247); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: cotyledon, leaf whorl, root, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, LP.08 eight leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT3G50190.1); Has 1193 Blast hits to 1065 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 1176; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:18592472..18594562 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 63598.20 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.65 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.48 | ||||||||||||||||||||||||||||
| Length | 539 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATPSKRRPP PPPPPPPRLL VLPPLPPPPP PPPPQLPFGP KLPFPHIIIR RKARRNYQLR PMLTWYFLTF MMRQKLQTRN QQPEETREEW VIWIKDKMEQ 101: VMRDAATTSW DKICIYRVPL SLKKSDKNSY FPQAVSLGPY HHGDEHLRPM DYHKWRAVNM VMKRTKQGIE MYIDAMKELE ERARACYEGP IGLSSNKFTQ 201: MLVLDGCFVL DLFRGAYEGF SKLGYDRNDP VFAMRGSMHS IRRDMLMLEN QLPLFVLNRL LELQLGTQYQ TGLVAQLAVR FFNPLMPTYM SSTKIENSQE 301: NNNKFFNPIA DKEKEELHCL DVFRRSLLQP SLKPDPRLSR SRWSRKPLVA DKRQQQLLHC VTELREAGIK FKRRKSDRFW DIQFKNGCLE IPKLLIHDGT 401: KSLFSNLIAY EQCHIDSTND ITSYIIFMDN LIDSAEDIRY LHYYDIIEHW LGNDSEVADV FNRLCQEVAF DLENTYLSEL SNKVDRYYNR KWNVLKATLK 501: HKYFSNPWAY FSFFAAVILL LLTLFQSFFT SYPYFKPPS |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)