AT3G50130.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Plant protein of unknown function (DUF247) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Plant protein of unknown function (DUF247); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: leaf apex, root, flower, carpel; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT3G50140.1); Has 12220 Blast hits to 6577 proteins in 475 species: Archae - 26; Bacteria - 903; Metazoa - 4175; Fungi - 967; Plants - 4043; Viruses - 563; Other Eukaryotes - 1543 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:18589111..18591222 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 66606.40 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.73 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.56 | ||||||||||||||||||||||||
| Length | 564 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVRILSFTPP PPPPPPPSFR SIPRPPPPPS FRSIPPRRHF FKKKSKSLPP PPPPLPPARP FGPILPWRYS VKRKRTNRPQ PSTIQKDMFT WYFLTLMMRQ 101: KLQKQNQKPE ETREEWVISI RDKMEQALRE DATTSWDKLC IYRVPQYLQE NNKKSYFPQT VSLGPFHHGN KHLLPMDRHK WRAVNMVMAR TKHDIEMYID 201: AMKELEDRAR ACYEGPIDLS SNKFSEMLVL DGCFVLELFR GADEGFSELG YDRNDPVFAM RGSMHSIQRD MVMLENQLPL FVLNRLLEIQ LGKRHQTGLV 301: SRLAVRFFDP LMPTDEPLTK TDDSLEQDKF FNPIADKDKG ELHCLDVFRR NLLRPCSNPE PRLSRMRWSW RTRVADKRQQ QLIHCVTELR EAGIKFRTRK 401: TDRFWDIRFK NGYLEIPKLL IHDGTKSLFS NLIAFEQCHI DSSNDITSYI IFMDNLIDSS EDVRYLHYCG IIEHWLGNDY EVADLFNRLC QEVAFDPQNS 501: YLSQLSNKVD RNYSRKWNVL KAILKHKYFN NPWAYFSFFA ALVLLVLTLF QSFFTAYPYF NPPS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)