AT3G50010.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.961 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G48320.1); Has 1593 Blast hits to 631 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1591; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:18537248..18539557 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 88295.50 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.20 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||||||
| Length | 769 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDPDPDSESE LLSLLTQLMF VEYFNLYWDA TPLLTELILL VSSMDLDSQP KPESEFMSLT TQAISLFNSM DLESQSKLLS DLMSMVFQNL SLFNSALDSE 101: ATTLFGKIIS LVSSMDLTTE EKPESDELVL LIQEILSLVN SRDSDSQPKR LVELISFISQ KISLIDETLE VKPEPELISL THQILSLVVS MNSNSGEYIS 201: LCPQAQVKLE NGRFRVLEDV SWRTNNKWHC LSVNWRTFKL SREEDTLHFI CIGCNGDNHK EFNNVPVEIN HPLHPNHSLQ LVVLQEDSTR ECYCCDEALS 301: RILYYCSACD FAISILCARK PPVFLINHHR PEWHGHPLAL FPRQAFLTCN LCALADPSSP IYMCPPCDFV THLRCINLPR VIKISRHSHR IYFTSSFEKE 401: GLSCGVCRRK INKLYGGYSC IKNGCWYAAH SRCATQKNVW DGVELEGVPE ENEEEVDPPF ATKGSGVIRH FTHRHLLRLD VDTGRDYDED KLCNICITPI 501: YFGNFYSCTP SCDYNLHETC ANFPRKIDHP IHPHQLNLEA GYGDGEINEY ECSVCPRKRT VGFLYRCRKC FYLHVQCAIA SEPLDHPSHI HPLYLTSKPD 601: EEQRKCSVCK KSGHCPTKET FNCIEECDFA LCFECATLAQ KVRYKHDKHV LTLSYGDKTS TMTYWCEICE ERLNPKERFY SCDEYCCVTI HIECLVGVDF 701: YMKPGSKWFN KYGAEVSVLP NNHHMSRPFC FICKKRCPHK TFFQCNGFEY CSRSCLLTKS KEVIYLGGH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)