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AT3G49910.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:17934214 (2008): cytosol
  • PMID:17317660 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15821981 (2005): cytosol cytosolic ribosomes
  • PMID:15734919 (2005): cytosol cytosolic ribosomes
  • PMID:15496452 (2005): nucleus
  • PMID:15028209 (2004): plastid
  • PMID:14617066 (2003): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Translation protein SH3-like family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Translation protein SH3-like family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: response to cold, translation; LOCATED IN: in 8 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Ribosomal protein L26, eukaryotic/archaeal (InterPro:IPR005756), Ribosomal protein L24, SH3-like (InterPro:IPR014723), Ribosomal protein L24/L26, conserved site (InterPro:IPR005825), KOW (InterPro:IPR005824); BEST Arabidopsis thaliana protein match is: Translation protein SH3-like family protein (TAIR:AT5G67510.1); Has 1113 Blast hits to 1113 proteins in 414 species: Archae - 314; Bacteria - 5; Metazoa - 375; Fungi - 141; Plants - 96; Viruses - 0; Other Eukaryotes - 182 (source: NCBI BLink).
Protein Annotations
BioGrid:9471eggNOG:COG0198eggNOG:KOG3401EMBL:AF370158EMBL:AL132965EMBL:AL132978EMBL:AY059101
EMBL:BT000681EMBL:CP002686EMBL:Z18485EnsemblPlants:AT3G49910EnsemblPlants:AT3G49910.1entrez:824153Gene3D:2.30.30.30
GeneID:824153Genevisible:P51414GO:GO:0003735GO:GO:0005634GO:GO:0005730GO:GO:0005774GO:GO:0005829
GO:GO:0005886GO:GO:0006412GO:GO:0009409GO:GO:0009507GO:GO:0016020GO:GO:0022625GO:GO:0022626
Gramene:AT3G49910.1hmmpanther:PTHR11143HOGENOM:HOG000216571InParanoid:P51414IntAct:P51414InterPro:IPR005756InterPro:IPR005824
InterPro:IPR005825InterPro:IPR008991InterPro:IPR014722iPTMnet:P51414KEGG:ath:AT3G49910KO:K02898OMA:CYRKKFV
PANTHER:PTHR11143PaxDb:P51414Pfam:P51414Pfam:PF00467Pfam:PF16906PhylomeDB:P51414PIR:T46057
PRIDE:P51414PRO:PR:P51414PROSITE:PS01108ProteinModelPortal:P51414Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-1799339
Reactome:R-ATH-72689Reactome:R-ATH-72706Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_190560.1scanprosite:PS01108SMART:SM00739
SMR:P51414STRING:3702.AT3G49910.1SUPFAM:SSF50104TAIR:AT3G49910TIGRfam:TIGR01080TIGRFAMs:TIGR01080UniGene:At.24890
UniGene:At.40263UniProt:P51414
Coordinates (TAIR10) chr3:+:18504311..18504751
Molecular Weight (calculated) 16945.60 Da
IEP (calculated) 11.44
GRAVY (calculated) -0.95
Length 146 amino acids
Sequence (TAIR10)
(BLAST)
001: MKYNPRVTSS RRKNRKAHFT ASSSERRVIM SSPLSTDLRQ KYNVRSMPIR KDDEVQIVRG TYKGREGKVV QVYRRKWVIH IERITREKVN GTTVNVGIQP
101: SKVVITKLRL DKDRKSLLER KAKGRAAADK EKGTKFTSED VMQNVD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)