AT3G49900.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Phototropic-responsive NPH3 family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT5G13600.1); Has 1290 Blast hits to 750 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 1280; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:18500635..18502614 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57950.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.23 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||||||||||
| Length | 517 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKRWTNLGFV DTIYEDEDYV DHHSSSLSSS SSSLSLSPKQ PINLSSSPSM ELESRVHKWS LANNSKPDVF VNVGGTRFHL HKDPLSKSGY LKRHLTGVNE 101: LTLSPPLNIT AETFSLVAGF CYGAHIELTP SNVVSLRIAV EVLLITEADD GGRVRDSLRN LTESYLRRVV FVNVDYIQIV LRSCLLLLPE SETTAFLIGR 201: CVEALMEIGD GDCVNEFLEE AVKLPAGDFN VVADAVQQRF PRHDLLYRIV DAYVKEHDGE MTEEEKVQIC NSIDCDKLSP PLLLHAVQNP KMPLRFIVRA 301: MLQEQLNTRH SIMVAAVAAS CAAPTGVRHR EIATEARDSS VTLGSLLQRD TAARQNCRLR AAMNSTSSRI ESLEKELDTM KRFLSKESEK QKSDRNIVES 401: RSRSVMDSAR SASFHCVHQP SNVNKTQRGD RGSVSNLSTT YRRRRASPPQ AQPQKSIGKR LIMGIKNAFS TSSKQVPKKN AYAVEEIYDG LEDFVWIKDD 501: NDDNISEELH SHYIKNK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)