AT3G49880.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.549 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : glycosyl hydrolase family protein 43 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
glycosyl hydrolase family protein 43; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 43 (InterPro:IPR006710); BEST Arabidopsis thaliana protein match is: Arabinanase/levansucrase/invertase (TAIR:AT5G67540.2); Has 1254 Blast hits to 1248 proteins in 224 species: Archae - 2; Bacteria - 1011; Metazoa - 1; Fungi - 133; Plants - 55; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:18496907..18498398 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53253.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.32 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||||||||||||||
| Length | 466 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRVMKNKHNK KATFLRCSPF GLVSTVVGCV FMIHLTMLYS RSYSVDLDLS PQLLIHHPIV RELERVEEEN IHMPPPRKRS PRAIKRKPKT PTTLVEEFLD 101: ENSQIRHLFF PDMKSAFGPT KEDTNDTSHY YFPGRIWTDT EGNPIQAHGG GILFDDISKV YYWYGEYKDG PTYLSHKKGA ARVDIIGVGC YSSKDLWTWK 201: NEGVVLAAEE TDETHDLHKS NVLERPKVIY NSDTGKYVMW MHIDDANYTK ASVGVAISDN PTGPFDYLYS RSPHGFDSRD MTVYKDDDNV AYLIYSSEDN 301: SVLHIGPLTE NYLDVKPVMK RIMVGQHREA PAIFKHQNTY YMITSGCTGW APNEALAHAA ESIMGPWETL GNPCVGGNSI FRSTTFFAQS TFVIPLPGVP 401: GVFIFMADRW NPADLRDSRY LWLPLIVGGP ADRPLEYSFG FPMWSRVSVY WHRQWRLPSA REKKIA |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)