suba logo
AT3G49860.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.973
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ADP-ribosylation factor-like A1B
Curator
Summary (TAIR10)
A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.
Computational
Description (TAIR10)
ADP-ribosylation factor-like A1B (ARLA1B); FUNCTIONS IN: GTP binding; INVOLVED IN: intracellular protein transport, protein transport, small GTPase mediated signal transduction; LOCATED IN: intracellular; EXPRESSED IN: hypocotyl, male gametophyte, root, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), Ras small GTPase, Rab type (InterPro:IPR003579), Small GTPase SAR1-type (InterPro:IPR006687), Ras small GTPase, Ras type (InterPro:IPR003577), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ADP-ribosylation factor-like A1C (TAIR:AT3G49870.1); Has 16899 Blast hits to 16895 proteins in 575 species: Archae - 10; Bacteria - 254; Metazoa - 7961; Fungi - 2407; Plants - 2569; Viruses - 3; Other Eukaryotes - 3695 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNUKeggNOG:KOG0075EMBL:CP002686EnsemblPlants:AT3G49860EnsemblPlants:AT3G49860.1entrez:824148Gene3D:3.40.50.300
GeneID:824148GO:GO:0005525GO:GO:0005622GO:GO:0007264GO:GO:0051607Gramene:AT3G49860.1hmmpanther:PTHR11711
hmmpanther:PTHR11711:SF178InParanoid:F4IZ82InterPro:IPR005225InterPro:IPR006689InterPro:IPR024156InterPro:IPR027417KEGG:ath:AT3G49860
OMA:MISCKNPPaxDb:F4IZ82Pfam:PF00025Pfscan:PS51417PRIDE:F4IZ82PRINTS:PR00328PROSITE:PS51417
ProteinModelPortal:F4IZ82Proteomes:UP000006548RefSeq:NP_190555.2SMR:F4IZ82STRING:3702.AT3G49860.1SUPFAM:SSF52540TAIR:AT3G49860
tair10-symbols:ARLA1Btair10-symbols:ATARLA1BTIGRfam:TIGR00231TIGRFAMs:TIGR00231UniGene:At.35561UniProt:F4IZ82
Coordinates (TAIR10) chr3:-:18491261..18492165
Molecular Weight (calculated) 19489.70 Da
IEP (calculated) 5.70
GRAVY (calculated) -0.03
Length 176 amino acids
Sequence (TAIR10)
(BLAST)
001: MTLQPNLQAK EMELSLVGLQ NSGKTSLVNV VATGEYSEDM IPTVGFNMRK VTKENVAIRL WDLGGQPRFR CMWERYCRAV SMIVYVVDAA DTENLSVSRS
101: ELHDLLSNAS LIGIPLLVLG NKIDIHGALS KEALTEEMGL SSVTSREVCC LMISCKNPTT IDQLTDWLVN HSKSKN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)