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AT3G49850.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:19947985 (2010): nucleus nuclear matrix nucleolus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : telomere repeat binding factor 3
Curator
Summary (TAIR10)
Encodes a telomeric DNA binding protein. In vitro, the protein preferentially binds double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.
Computational
Description (TAIR10)
telomere repeat binding factor 3 (TRB3); FUNCTIONS IN: single-stranded telomeric DNA binding, DNA binding, protein homodimerization activity, sequence-specific DNA binding transcription factor activity, double-stranded telomeric DNA binding; INVOLVED IN: in 7 processes; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Histone H1/H5 (InterPro:IPR005818), Myb transcription factor (InterPro:IPR015495), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Homeodomain-like/winged-helix DNA-binding family protein (TAIR:AT5G67580.2); Has 536 Blast hits to 530 proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 59; Plants - 395; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JVZ1eggNOG:ENOG41105F7EMBL:AL132965EMBL:AY058887EMBL:AY065069EMBL:AY079043EMBL:AY519542
EMBL:CP002686EMBL:U83838EMBL:U83839EnsemblPlants:AT3G49850EnsemblPlants:AT3G49850.1entrez:824147Gene3D:1.10.10.10
Gene3D:1.10.10.60GeneID:824147Genevisible:Q9M2X3GO:GO:0000785GO:GO:0000786GO:GO:0003691GO:GO:0003700
GO:GO:0005634GO:GO:0005730GO:GO:0006334GO:GO:0006351GO:GO:0009651GO:GO:0009723GO:GO:0009733
GO:GO:0009739GO:GO:0009751GO:GO:0009753GO:GO:0042803GO:GO:0043047GO:GO:0046686Gramene:AT3G49850.1
hmmpanther:PTHR21717hmmpanther:PTHR21717:SF27HOGENOM:HOG000238013InParanoid:Q9M2X3IntAct:Q9M2X3InterPro:IPR001005InterPro:IPR005818
InterPro:IPR009057InterPro:IPR011991InterPro:IPR017930iPTMnet:Q9M2X3KEGG:ath:AT3G49850KO:K09422MINT:MINT-1212448
ncoils:CoilOMA:AHIFAKAPaxDb:Q9M2X3Pfam:PF00249Pfam:PF00538Pfam:Q9M2X3Pfscan:PS51294
Pfscan:PS51504PhylomeDB:Q9M2X3PIR:T46051PRIDE:Q9M2X3PRO:PR:Q9M2X3PROSITE:PS51294PROSITE:PS51504
ProteinModelPortal:Q9M2X3Proteomes:UP000006548RefSeq:NP_190554.1SMART:SM00526SMART:SM00717SMR:Q9M2X3STRING:3702.AT3G49850.1
SUPFAM:SSF46689SUPFAM:SSF46785TAIR:AT3G49850tair10-symbols:ATTRB3tair10-symbols:TBP2tair10-symbols:TRB3UniGene:At.26646
UniProt:Q9M2X3
Coordinates (TAIR10) chr3:+:18489451..18490731
Molecular Weight (calculated) 32248.80 Da
IEP (calculated) 10.16
GRAVY (calculated) -0.56
Length 295 amino acids
Sequence (TAIR10)
(BLAST)
001: MGAPKLKWTP EEETALKAGV LKHGTGKWRT ILSDPVYSTI LKSRSNVDLK DKWRNISVTA LWGSRKKAKL ALKRTPLSGS RQDDNATAIT IVSLANGDVG
101: GQQIDAPSPP AGSCEPPRPS TSVDKIILEA ITSLKRPFGP DGKSILMYIE ENFKMQPDMK RLVTSRLKYL TNVGTLVKKK HKYRISQNYM AEGEGQRSPQ
201: LLLEGNKENT PKPEENGVKN LTKSQVGGEV MIMGMTEKEA AAAAARAVAE AEFAMAEAEE AAREADKAEA EAEAAHIFAK AAMKAVKYRM HSQTR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)