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AT3G49790.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Carbohydrate-binding protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Carbohydrate-binding protein; FUNCTIONS IN: ATP binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: ATPase-like, ATP-binding domain (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: Carbohydrate-binding protein (TAIR:AT1G10150.1); Has 109 Blast hits to 107 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:824141eggNOG:ENOG410IT0EeggNOG:ENOG4111YI2EMBL:AK228859
EMBL:AL132965EMBL:BT011620EMBL:BT012621EMBL:CP002686
EnsemblPlants:AT3G49790EnsemblPlants:AT3G49790.1entrez:824141GeneID:824141
Gramene:AT3G49790.1hmmpanther:PTHR21477hmmpanther:PTHR21477:SF12HOGENOM:HOG000242114
KEGG:ath:AT3G49790OMA:IVEAPWMPhylomeDB:Q9M2X9PIR:T46045
Proteomes:UP000006548RefSeq:NP_190548.1STRING:3702.AT3G49790.1TAIR:AT3G49790
UniGene:At.35568UniProt:Q9M2X9
Coordinates (TAIR10) chr3:-:18468296..18469396
Molecular Weight (calculated) 40341.40 Da
IEP (calculated) 10.13
GRAVY (calculated) -0.13
Length 366 amino acids
Sequence (TAIR10)
(BLAST)
001: MDKLGLSKRG YFDFALKNKK WILLAVSGYG AFRVYHSPSI SQKRKRISKL FTLLLNLIEA ASDSAETVSV ISKDLTEFLR SDSDQIPNSL KQISKIAKSD
101: ELNSSLIRFT QAMTVGLIRG IDDGSGSGFT DRVMDKLFTK SGSGFASAIV GSFARNLVVA LYSSAGDGSN SKLLDAVFSD DGRRLIGDCV QRFVSTAVSV
201: YLDKTSDVNV FDDLFAGLTN PKHEGKVKQT LVTLCNSAVE TFVRASRKPV QLNRSSSCQD SSQTLTVGST KQATWIDRVS SSLSVPSNRK YVVDLTGRVT
301: FETVRSLLEV LIERANGKVE SYVEKVRERG NETRRFVRVK TSLLHSLCLS LCLQIVEAPW MLTPRN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)