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AT3G49725.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.855
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GTP-binding protein, HflX
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GTP-binding protein, HflX; FUNCTIONS IN: GTP binding; LOCATED IN: intracellular, chloroplast; CONTAINS InterPro DOMAIN/s: GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HflX (InterPro:IPR016496), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: GTP-binding protein, HflX (TAIR:AT5G57960.1); Has 11258 Blast hits to 11241 proteins in 2608 species: Archae - 167; Bacteria - 7727; Metazoa - 332; Fungi - 38; Plants - 97; Viruses - 17; Other Eukaryotes - 2880 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2262eggNOG:KOG0410eggNOG:KOG4197EMBL:AK227647EMBL:AL132965EMBL:CP002686EnsemblPlants:AT3G49725
EnsemblPlants:AT3G49725.1entrez:7922380Gene3D:3.40.50.300GeneID:7922380Genevisible:Q0WTB4GO:GO:0005525GO:GO:0009507
GO:GO:0046872Gramene:AT3G49725.1hmmpanther:PTHR10229hmmpanther:PTHR10229:SF0HOGENOM:HOG000083465InterPro:IPR006073InterPro:IPR016496
InterPro:IPR025121InterPro:IPR027417InterPro:IPR030394InterPro:IPR032305KEGG:ath:AT3G49725OMA:FFIHLLRPANTHER:PTHR10229
PaxDb:Q0WTB4Pfam:PF01926Pfam:PF13167Pfam:PF16360Pfam:Q0WTB4Pfscan:PS51705PhylomeDB:Q0WTB4
PIR:T46039PRIDE:Q0WTB4PRINTS:PR00326PRO:PR:Q0WTB4PROSITE:PS51705ProteinModelPortal:Q0WTB4Proteomes:UP000006548
RefSeq:NP_001154669.1SMR:Q0WTB4STRING:3702.AT3G49725.1SUPFAM:SSF52540TAIR:AT3G49725TIGRfam:TIGR03156TIGRFAMs:TIGR03156
UniGene:At.74537UniProt:Q0WTB4
Coordinates (TAIR10) chr3:-:18442448..18445397
Molecular Weight (calculated) 69583.00 Da
IEP (calculated) 5.41
GRAVY (calculated) -0.57
Length 620 amino acids
Sequence (TAIR10)
(BLAST)
001: MSVTTSFGIW LNHINLDNQA SFLYNNPHFC NRRFNRISML RTVSLARNRL RSETPSSFLA RDRLRSKTPS SSPFSSKRHT PKTSEIEEES TPKDSVLLNP
101: KDPSSAPKLF LVQPRLAPPK YLQAKLNEAL CLANSLEEQR YGYFESDFFD KELPSHVVVQ NPVRRSSKPR VDTYFGSGTV DNIKCHLNAE DSKEEVDAVF
201: VNAILTAIQQ RNLERIWAKP VLDRVGLIIE IFNAHAHTKE AKLQAELAAL MYNKSRLVRV RGTDGRHTFG QFGEAEVVSA RGRAGSKGTG GGFVGGAGET
301: ELQLQRRRIS DRRIRLLSQI KEAQRTRLLQ RAGRKKRVGL EGESSGTIAV VGYTNAGKST LISALTKTAL YCNERLFATL DPTLKSAHLP SGNFVLLSDT
401: VGFISDLPIQ LVKAFQSTLE EVVEADLLLH VVDSTAPNIE EHRSTVLHVL NQIGVPEEKL QNMIEVWNKI DYEEDEVEEE KYLDDGEGVG EEDEDEADLK
501: AEETVDASEA TVDEDQIQNG DGDDADGWLL SEDENADDPE FWKVPEVAKV DAANKKGPDV RVSALTGVGL KELLYLIDDK MKEKKLKSPT IVERSELHKR
601: KWRPPRNDDE EERLIPLDQR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)