AT3G49590.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Autophagy-related protein 13 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Autophagy-related protein 13; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 13 (InterPro:IPR018731); BEST Arabidopsis thaliana protein match is: Autophagy-related protein 13 (TAIR:AT3G18770.1); Has 1957 Blast hits to 674 proteins in 207 species: Archae - 0; Bacteria - 87; Metazoa - 293; Fungi - 173; Plants - 114; Viruses - 5; Other Eukaryotes - 1285 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:18377892..18380104 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66567.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.39 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.58 | ||||||||||||||||||||||||||||||||||||
| Length | 603 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDFPENLPSD IGRLEQIVSH FFPKALHIVL NSRIPSLQSR GRTRERLSGL NVRKSDKWFN LVMGDRPAAL EKLHSWHRNI LDSMIIDIIL VHPISNDNLD 101: DDDDHSDSVV RSAETVIERW VVQYENPLIM SPQSSDSATR YQKVYKKSII LLRSLYAQTR LLPAYRVSRQ LSSSLASSGY DLIYKVSSFS DIFSGPVTET 201: MKEFRFAPVE VPPGRLCASV TYRSDLSDFN LGAHITLPPR IITDYVGSPA TDPMRFFPSP GRSVEGHSFT GRAGRPPLTG SSAERPHSWT SGFHRPPAQF 301: ATPNQSFSPA QSHQLSPGLH DFHWSRTDAF GDNHQLSPPF SPSGSPSTPR YISGGNSPRI NVRPGTAPVT IPSSATLNRY VSSNFSEPGR NPLPPFSPKS 401: TRRSPSSQDS LPGIALYRSS RSGESPSGLM NQYPTQKLSK DSKYDSGRFS GVLSSSDSPR FAFSRSPSRL SSQDDLDDPD CSCPFDFDDV DESGLQYSHS 501: LDRRKTSSSI SQSLPLGRRS SQDAAVGVLV HMLKTAPPLR QDSSTYMASM SGVQREGSVS GTESEFSMAR STSDALEELR NYKQLKDLLL SKSKSGSGPT 601: RVH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)