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AT3G49580.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.940
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : response to low sulfur 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RESPONSE TO LOW SULFUR 1 (LSU1); BEST Arabidopsis thaliana protein match is: response to low sulfur 3 (TAIR:AT3G49570.1); Has 73 Blast hits to 73 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
EMBL:AK117604EMBL:AL132964EMBL:AY086614EMBL:BT005036EMBL:CP002686EnsemblPlants:AT3G49580EnsemblPlants:AT3G49580.1
entrez:824120ExpressionAtlas:Q9SCK1GeneID:824120Gramene:AT3G49580.1hmmpanther:PTHR34283HOGENOM:HOG000238756IntAct:Q9SCK1
ncoils:CoilOMA:TEMIKLWPhylomeDB:Q9SCK1PIR:T46235Proteomes:UP000006548RefSeq:NP_190527.1STRING:3702.AT3G49580.1
TAIR:AT3G49580tair10-symbols:LSU1UniGene:At.35588UniGene:At.67564UniProt:Q9SCK1
Coordinates (TAIR10) chr3:-:18375435..18375719
Molecular Weight (calculated) 10781.80 Da
IEP (calculated) 4.31
GRAVY (calculated) -0.40
Length 94 amino acids
Sequence (TAIR10)
(BLAST)
1: MANRGGCVTV AAEEMDELRR RNIELSREVA EMKTEMIKLW QRTVVAEEAE EQLCSQLAEL EVESLEQARD YHDRMLFLMD QISRLSSSSV VSSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)