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AT3G49490.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:21433285 (2011): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 722 Blast hits to 186 proteins in 64 species: Archae - 0; Bacteria - 30; Metazoa - 72; Fungi - 48; Plants - 38; Viruses - 0; Other Eukaryotes - 534 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXZEeggNOG:ENOG410Z795EMBL:AL132964EMBL:CP002686EnsemblPlants:AT3G49490EnsemblPlants:AT3G49490.1entrez:824111
GeneID:824111Gramene:AT3G49490.1hmmpanther:PTHR34361hmmpanther:PTHR34361:SF2KEGG:ath:AT3G49490ncoils:CoilOMA:CMARYHR
PIR:T46227Proteomes:UP000006548RefSeq:NP_566921.1STRING:3702.AT3G49490.1TAIR:AT3G49490UniGene:At.24708UniProt:Q9SCK9
Coordinates (TAIR10) chr3:-:18344926..18348648
Molecular Weight (calculated) 105350.00 Da
IEP (calculated) 4.77
GRAVY (calculated) -0.75
Length 953 amino acids
Sequence (TAIR10)
(BLAST)
001: MTDGFRYNGF SGIAYPFWLS SPPPPTPPHH PASAPPFQQS NPVESYDPAK EVFDPMMLYH DSYQRSPANW SNNPSYRENS RSQTPSSSFY ADNTQHGNSG
101: LRGEDSSYKD MLSPSGFYSS RESSSDFVSL PPTENFSERQ RLNFEPTYSS ATLAPVSSYA DMLIRNSQDS FFTPIASSGV YSSSNAVDEK RPGYYFLGSD
201: RSETMNVVSA SRVEPYMCDT DCNPSFPMPN FITQALFDGS QTGLRVGDGR SFPSNSDVCS HAPQNFLGAQ SSLQSSSVEP VNFDVLLGYG EATGHIKPLP
301: ENPNLPYPVV GSQGSRSPRS SYPLPSIINS SVSLIKDEVE GSGVSSLYQR PYTLVADSEN GVSESSLKNA TEDLNCHEPR SWSHFMVTSE GPSAPTMFSM
401: GSESGGPSAP TMKADNENAQ SAGNYKPPFE GSTTQPSEDV PTNQESCNLQ KQTFDIMDRD KKIRSLTDVG LDLSSRSNAD DVSTGRSPER HFCDQGDFPS
501: PTSYPRVSSV VNAMHNLSEV LVYECFNNGS WLKLEQLENL DKVVDNLTKC LKKITDNKTT AGEATLPTQS MHVTCPNVVD LHEAATGVAK DFQRFSVKPL
601: DSFGVKEPVD KNEMTQSIKN ILASNFPDGE ENHPQTLLYK NLWLETEAAL CSTTCMARYH RIKNEIGNLK LNNKEISADA VSFMQEPSLN TQKSVPIMNA
701: NADKDTPESI IKHGSNCGKN AATMSHDASE SSRINSDPVD AVLSVMSRSF TGGLEQTIRG NLRPDDATFA KIPDAIWQET SASTTENKHR EVIDRFQILK
801: EQETERKLKS QKLPDSDIDV IDRFQILKQQ ETNRKLKAQK CPETKKGDQE DKLEGSVMAN MGRSSDVSDV MDRFQILKRR EAEQVKKSLN SMDVDSDSEN
901: DQPQKRDHLW SDSLFPIRGH SQRETCAADT EQSASGKGYE SPTSDWEHVI KDD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)