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AT3G49480.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.426
nucleus 0.297
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Protein with RNI-like/FBD-like domains
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein with RNI-like/FBD-like domains; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT1G05080.1); Has 625 Blast hits to 611 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 623; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
EMBL:AC012329EMBL:AL132964EMBL:CP002686EnsemblPlants:AT3G49480
EnsemblPlants:AT3G49480.1entrez:824110Gene3D:3.80.10.10GeneID:824110
Genevisible:Q9CA04Gramene:AT3G49480.1hmmpanther:PTHR32212hmmpanther:PTHR32212:SF126
HOGENOM:HOG000220924InParanoid:Q9CA04InterPro:IPR001810InterPro:IPR006566
InterPro:IPR013101InterPro:IPR032675KEGG:ath:AT3G49480PaxDb:Q9CA04
Pfam:PF00646Pfam:PF07723Pfam:PF08387Pfam:Q9CA04
PIR:T46226PRO:PR:Q9CA04ProteinModelPortal:Q9CA04Proteomes:UP000006548
RefSeq:NP_190517.1SMART:SM00256SMART:SM00579SMR:Q9CA04
SUPFAM:SSF52047SUPFAM:SSF81383TAIR:AT3G49480UniGene:At.65262
UniProt:Q9CA04
Coordinates (TAIR10) chr3:-:18342544..18343473
Molecular Weight (calculated) 35862.40 Da
IEP (calculated) 6.31
GRAVY (calculated) -0.15
Length 309 amino acids
Sequence (TAIR10)
(BLAST)
001: MPKSFYFCKT LERLTLSDKI LVDVPCQVSL PSLRELDLFC VVYKDEDSHV KLLSSCPVLK HLKVTRNRRV EDNVRTFRVE VPSLLRLDYK AGMMFREDSD
101: MSDPFLVTDT PNLLSLHIFD TVGYSLSVWY MPHLVTVVTD ELFPSEKFMR PLSSVKYLAL SPFDTMVPWC DAVNNYSRLV ECMIHLSEYD LLESLLVLLS
201: KCSKLKVFLV DSDIPRWNHD PALWNQPSSI PRCLSSHLEI FEWDGYVGRE DEKKIIRYIL ENSKYLKTAG ISPNSTFSGE EKQKMEELES MHRTPTSVLL
301: SSARMSFRY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)