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AT3G49470.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.954
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : nascent polypeptide-associated complex subunit alpha-like protein 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nascent polypeptide-associated complex subunit alpha-like protein 2 (NACA2); CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Nascent polypeptide-associated complex, alpha subunit (InterPro:IPR016641), Nascent polypeptide-associated complex NAC (InterPro:IPR002715); BEST Arabidopsis thaliana protein match is: Nascent polypeptide-associated complex (NAC), alpha subunit family protein (TAIR:AT4G10480.1); Has 1390 Blast hits to 1373 proteins in 295 species: Archae - 27; Bacteria - 8; Metazoa - 613; Fungi - 295; Plants - 175; Viruses - 7; Other Eukaryotes - 265 (source: NCBI BLink).
Protein Annotations
BioGrid:9427eggNOG:COG1308eggNOG:KOG2239EMBL:AC012329EMBL:AF370545EMBL:AL132964EMBL:AY072536
EMBL:CP002686EnsemblPlants:AT3G49470EnsemblPlants:AT3G49470.1entrez:824109GeneID:824109Genevisible:Q94JX9GO:GO:0005829
GO:GO:0015031Gramene:AT3G49470.1hmmpanther:PTHR21713HOGENOM:HOG000239674InParanoid:Q94JX9IntAct:Q94JX9InterPro:IPR002715
InterPro:IPR016641iPTMnet:Q94JX9KEGG:ath:AT3G49470KO:K03626ncoils:CoilOMA:EIGATSQPANTHER:PTHR21713
PaxDb:Q94JX9Pfam:PF01849Pfam:Q94JX9Pfscan:PS51151PhylomeDB:Q94JX9PIR:T46225PRIDE:Q94JX9
PRO:PR:Q94JX9PROSITE:PS51151ProteinModelPortal:Q94JX9Proteomes:UP000006548RefSeq:NP_190516.1SMART:SM01407SMR:Q94JX9
STRING:3702.AT3G49470.1TAIR:AT3G49470tair10-symbols:NACA2UniGene:At.1027UniProt:Q94JX9
Coordinates (TAIR10) chr3:+:18341072..18342273
Molecular Weight (calculated) 23713.40 Da
IEP (calculated) 4.11
GRAVY (calculated) -0.70
Length 217 amino acids
Sequence (TAIR10)
(BLAST)
001: MSPPPAVVTE SADGQPEQPP VTAIAEELEK KLQTDEPIVE DVKDDEDDDD DDEEEEDDDA QGVSGSSKQS RSEKKSRKAM LKLGMKPVTG VSRVTIKRTK
101: NVLFFISKPD VFKSPHSETY VIFGEAKIED LSSQLQTQAA QQFRMPEIGA TSQRAEASTA TVEAQVEEDE EEIDETGVEA RDIDLVMTQA GVSRSKAVKA
201: LKSHDGDIVS AIMELTT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)