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AT3G49260.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.676
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : IQ-domain 21
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
IQ-domain 21 (iqd21); CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 2 (TAIR:AT5G03040.3); Has 906 Blast hits to 903 proteins in 65 species: Archae - 0; Bacteria - 4; Metazoa - 85; Fungi - 8; Plants - 792; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410INF3eggNOG:ENOG410YI57EMBL:AF361635EMBL:AY087861EMBL:AY484700EMBL:BT000602EMBL:CP002686
EnsemblPlants:AT3G49260EnsemblPlants:AT3G49260.1EnsemblPlants:AT3G49260.2entrez:824087ExpressionAtlas:Q9ASW3GeneID:824087Gramene:AT3G49260.1
Gramene:AT3G49260.2hmmpanther:PTHR32295hmmpanther:PTHR32295:SF33IntAct:Q9ASW3InterPro:IPR000048InterPro:IPR025064ncoils:Coil
Pfam:PF00612Pfam:PF13178Pfscan:PS50096PhylomeDB:Q9ASW3PROSITE:PS50096Proteomes:UP000006548RefSeq:NP_566917.1
RefSeq:NP_974405.1SMART:SM00015SMR:Q9ASW3STRING:3702.AT3G49260.3TAIR:AT3G49260tair10-symbols:iqd21UniGene:At.19623
UniProt:Q9ASW3
Coordinates (TAIR10) chr3:+:18262755..18265859
Molecular Weight (calculated) 52097.20 Da
IEP (calculated) 10.54
GRAVY (calculated) -0.91
Length 471 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKKGSGGWF STVKKKVFKS SPKDSKRENN IGSNNADIWQ QQHDTQEVVS FEHFPAESSP EISHDVESTA STPATNVGDR KHAMAVAIAT AAAAEAAVAA
101: AQAAAKVVRL AGYNRQTEED SAAVLIQSHY RGYLARRALR ALKGLVRLQA LVRGNHVRKQ AQMTMKCMQA LVRVQGRVRA RRLQVAHDRF KKQFEEEEKR
201: SGMEKPNKGF ANLKTEREKP KKLHEVNRTS LYQTQGKEKE RSEGMMKRER ALAYAYTYQR QMQHTNSEEG IGLSSNGPDR NQWAWNWLDH WMSSQPYTGR
301: QTGPGPGPGQ YNPPPYPPFP TAAATTTSDD VSEKTVEMDV TTPTSLKGNI IGLIDREYID LGSYRQGHKQ RKSPTHIPSY MAPTASAKAK VRDQGPTVKL
401: QGTSFMPYWN SSTKNGSVNG SGCDSSSSGG AITTGYPGPR SPNPKSDIRR KPVSPSQSPT GFGKRGWRHD H
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)