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AT3G49250.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.910
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : defective in meristem silencing 3
Curator
Summary (TAIR10)
Similar to hinge-domain region of structural maintenance of chromosomes (SMC)proteins.Putative chromosome architecture protein that can potentialy link nucleic acids in facilitating an RNA1-mediated epigenetic modification involving secondary siRNA and spreading of DNA methylation.
Computational
Description (TAIR10)
DEFECTIVE IN MERISTEM SILENCING 3 (DMS3); BEST Arabidopsis thaliana protein match is: gamma-irradiation and mitomycin c induced 1 (TAIR:AT5G24280.1); Has 82 Blast hits to 81 proteins in 17 species: Archae - 6; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
BioGrid:9404eggNOG:ENOG410II3YeggNOG:ENOG410YVP4EMBL:AL132956EMBL:AY049288EMBL:AY090286EMBL:CP002686
EnsemblPlants:AT3G49250EnsemblPlants:AT3G49250.1entrez:824086GeneID:824086Genevisible:Q94A79GO:GO:0000419GO:GO:0006306
GO:GO:0031047GO:GO:0042803GO:GO:0070921GO:GO:0080188Gramene:AT3G49250.1hmmpanther:PTHR33566HOGENOM:HOG000070687
InParanoid:Q94A79IntAct:Q94A79iPTMnet:Q94A79KEGG:ath:AT3G49250ncoils:CoilOMA:QFMAYITPaxDb:Q94A79
Pfam:Q94A79PhylomeDB:Q94A79PIR:T45830PRIDE:Q94A79PRO:PR:Q94A79ProteinModelPortal:Q94A79Proteomes:UP000006548
RefSeq:NP_566916.1STRING:3702.AT3G49250.1TAIR:AT3G49250tair10-symbols:DMS3tair10-symbols:IDN1UniGene:At.23295UniProt:Q94A79
Coordinates (TAIR10) chr3:-:18258613..18260803
Molecular Weight (calculated) 46769.90 Da
IEP (calculated) 7.22
GRAVY (calculated) -0.43
Length 420 amino acids
Sequence (TAIR10)
(BLAST)
001: MYPTGQQISF QTTPLNVQDP TRMMNLDQSS PVARNETQNG GGIAHAEFAM FNSKRLESDL EAMGNKIKQH EDNLKFLKSQ KNKMDEAIVD LQVHMSKLNS
101: SPTPRSENSD NSLQGEDINA QILRHENSAA GVLSLVETLH GAQASQLMLT KGVVGVVAKL GKVNDENLSQ ILSNYLGTRS MLAVVCRNYE SVTALEAYDN
201: HGNIDINAGL HCLGSSIGRE IGDSFDAICL ENLRPYVGQH IADDLQRRLD LLKPKLPNGE CPPGFLGFAV NMIQIDPAYL LCVTSYGYGL RETLFYNLFS
301: RLQVYKTRAD MISALPCISD GAVSLDGGII RKTGIFNLGN RDEVNVRFAK PTASRTMDNY SEAEKKMKEL KWKKEKTLED IKREQVLREH AVFNFGKKKE
401: EFVRCLAQSS CTNQPMNTPR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)