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AT3G49150.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.548
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : F-box/RNI-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT3G59240.1); Has 1918 Blast hits to 1865 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 29; Fungi - 4; Plants - 1883; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JPGPeggNOG:ENOG41117I0EMBL:AL132956EMBL:AL132967
EMBL:CP002686EnsemblPlants:AT3G49150EnsemblPlants:AT3G49150.1entrez:824076
Gene3D:3.80.10.10GeneID:824076Genevisible:Q9M3B7Gramene:AT3G49150.1
hmmpanther:PTHR31639hmmpanther:PTHR31639:SF6HOGENOM:HOG000015201InParanoid:Q9M3B7
InterPro:IPR001810InterPro:IPR006566InterPro:IPR032675KEGG:ath:AT3G49150
PaxDb:Q9M3B7Pfam:PF00646Pfam:Q9M3B7PIR:T45820
PRIDE:Q9M3B7PRO:PR:Q9M3B7ProteinModelPortal:Q9M3B7Proteomes:UP000006548
RefSeq:NP_190484.3SMART:SM00579STRING:3702.AT3G49150.1SUPFAM:SSF52058
SUPFAM:SSF81383TAIR:AT3G49150UniGene:At.65794UniProt:Q9M3B7
Coordinates (TAIR10) chr3:+:18218858..18221877
Molecular Weight (calculated) 72079.50 Da
IEP (calculated) 4.88
GRAVY (calculated) -0.01
Length 630 amino acids
Sequence (TAIR10)
(BLAST)
001: MDICCKDIIS DHSKKDIISD LPEALICHIL SFLPIEDSAL TSVLSKKWQH LFAFRPNLEF DDAVVYLNPD GERNETIFEN FVDRVLSLQG DYPINKFSLT
101: CRDFTDPTCV SRWISNVMER GVSDLDLRCI VYWDNGTMPP DIFVSKALVH LRIETGNGAF IDVEDVFLPN LKTLYLNKVL LRHSDNGFVK LITSCHVLED
201: LFIMNICWDG YLKRSLSSKT LKRLTFFCED VHAVNPESVS FDTPNLVYFV YHDCVADKYK NMNFDSLVYA SICLQMTSHQ RTHASYEHLV GNATDFLLGI
301: SNVQILELFA NTIEVLTFCC EQIPVFKNLV CLIIKTDQKA GWESLPVLLK NCPDLESLIF DGLHHNDTIK CEDVDGCLCK SSRGIPSCLS SSPVQFLTIW
401: KFGEICDDYD DMEKQIELVM YFLETMPNLE EMKLFYDTQI YEDVISKLQM DLRRTLSLRS LFNARCYQPS CSGIIQRDDV HEEKPHYGSF LHQRSFSSSM
501: ILSQQHMMRS PSHFPLCSPF GVSTYRPMST SHISGSDESG DVNHVAETLT DLVQQDTVIE VADAAIDSSI QLDFVQQIVH NVHSLTGLNW WASIVFTTFL
601: IRGVTIPLMI ECERWFSKRM VIKQCSFVNT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)