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AT3G49140.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.873
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:20061580 (2010): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G24060.2); Has 70134 Blast hits to 25407 proteins in 885 species: Archae - 91; Bacteria - 11736; Metazoa - 6625; Fungi - 3698; Plants - 39243; Viruses - 481; Other Eukaryotes - 8260 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AK229783EMBL:AL132956EMBL:AL132967EMBL:CP002686EnsemblPlants:AT3G49140
EnsemblPlants:AT3G49140.1entrez:824075GeneID:824075Genevisible:Q0WMN5GO:GO:0010181GO:GO:0016491Gramene:AT3G49140.1
hmmpanther:PTHR13343hmmpanther:PTHR13343:SF13HOGENOM:HOG000085042InterPro:IPR012349iPTMnet:Q0WMN5KEGG:ath:AT3G49140OMA:NIDWLDR
PaxDb:Q0WMN5Pfam:Q0WMN5PIR:T46116PRIDE:Q0WMN5PRO:PR:Q0WMN5ProteinModelPortal:Q0WMN5Proteomes:UP000006548
RefSeq:NP_190483.3STRING:3702.AT3G49140.1SUPFAM:SSF50475TAIR:AT3G49140UniGene:At.35645UniProt:Q0WMN5
Coordinates (TAIR10) chr3:-:18212187..18215557
Molecular Weight (calculated) 55873.80 Da
IEP (calculated) 4.05
GRAVY (calculated) -0.77
Length 499 amino acids
Sequence (TAIR10)
(BLAST)
001: MIESVMAVRL STGFCSSTAL LQYRTAPSSE EGGNCFHYAS RRVFQPQRIH HIDGSGFLKY NSDYITRKHL RKNRTQATAE YVDSASDPEK QTGKSRYHPS
101: EEIRASLPQN DGDSRLSPAE TTRTIIEVNN KGTLMLTGSI GDGVHENILW PDIPYITDQN GNLYFQVKED EDVMQSVTSE NNYVQVIVGF DTMEMIKEME
201: LMGLSDSDFE TEDDESGDDD SEDTGEDEDE EEWVAILEDE DEDDDDDDDD DEDDDDSDSD ESLGDWANLE TMRSCHPMFF AKRMTEVASN DPVDWMDQPS
301: AGLAIQGLLS HILVEDYSDI QKKLADSNST TNGNKDAENL VDKLEDNSKA GGDESEIDSS QDEKARNVVA FYKLEMIRIQ LITAQGDQTE VEVEDVRKAQ
401: PDAIAHASAE IISRLEESGD KITEALKSLC WRHNSIQAEE VKLIGIDSLG FDLRLCAGAK IESLRFAFST RATSEENAEG QIRKLLFPKT NQSTQPKPK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)