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AT3G49100.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.977
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27177187 (2016): nucleus
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Signal recognition particle, SRP9/SRP14 subunit
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Signal recognition particle, SRP9/SRP14 subunit; FUNCTIONS IN: 7S RNA binding, signal recognition particle binding; INVOLVED IN: negative regulation of translational elongation, SRP-dependent cotranslational protein targeting to membrane; LOCATED IN: signal recognition particle; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Signal recognition particle, SRP9/SRP14 subunit (InterPro:IPR009018), Signal recognition particle, SRP9 subunit (InterPro:IPR008832); Has 222 Blast hits to 222 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 140; Fungi - 16; Plants - 42; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).
Protein Annotations
BioGrid:9389eggNOG:ENOG41123E8eggNOG:KOG3465EMBL:AL132967
EMBL:AY085335EMBL:BT004743EMBL:CP002686EnsemblPlants:AT3G49100
EnsemblPlants:AT3G49100.1entrez:824071ExpressionAtlas:Q9SMU7Gene3D:3.30.720.10
GeneID:824071Genevisible:Q9SMU7GO:GO:0005786GO:GO:0006614
GO:GO:0008312GO:GO:0045900Gramene:AT3G49100.1hmmpanther:PTHR12834
hmmpanther:PTHR12834:SF12HOGENOM:HOG000283871InParanoid:Q9SMU7IntAct:Q9SMU7
InterPro:IPR008832InterPro:IPR009018KEGG:ath:AT3G49100KO:K03109
OMA:VCLQYKTPaxDb:Q9SMU7Pfam:PF05486Pfam:Q9SMU7
PhylomeDB:Q9SMU7PIR:T46120PIRSF:PIRSF017029PRIDE:Q9SMU7
PRO:PR:Q9SMU7ProteinModelPortal:Q9SMU7Proteomes:UP000006548Reactome:R-ATH-1799339
RefSeq:NP_190479.1SMR:Q9SMU7STRING:3702.AT3G49100.1SUPFAM:SSF54762
TAIR:AT3G49100UniGene:At.35648UniProt:Q0WS60UniProt:Q9SMU7
Coordinates (TAIR10) chr3:+:18196944..18198298
Molecular Weight (calculated) 12023.50 Da
IEP (calculated) 9.52
GRAVY (calculated) -0.81
Length 103 amino acids
Sequence (TAIR10)
(BLAST)
001: MVYIASWDEF VDRSVQLFRA DPESTRYVMK YRHCDGKLVL KVTDNKECLK FKTDQAQEAK KMEKLNNIFF TLMARGPDVD LSEVTGKEQM ETQPAKKGRG
101: RKQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)