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AT3G49080.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein S5 domain 2-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein S5 domain 2-like superfamily protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome, intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S9 (InterPro:IPR000754), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S9, conserved site (InterPro:IPR020574), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721); BEST Arabidopsis thaliana protein match is: ribosomal protein S9 (TAIR:AT1G74970.1); Has 8295 Blast hits to 8282 proteins in 2846 species: Archae - 200; Bacteria - 5387; Metazoa - 167; Fungi - 129; Plants - 162; Viruses - 18; Other Eukaryotes - 2232 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0103eggNOG:KOG1697EMBL:AK176622EMBL:AY140063
EMBL:BT006583EMBL:CP002686EnsemblPlants:AT3G49080EnsemblPlants:AT3G49080.1
entrez:824070Gene3D:3.30.230.10GeneID:824070GO:GO:0003735
GO:GO:0005840GO:GO:0006412Gramene:AT3G49080.1HAMAP:MF_00532_B
hmmpanther:PTHR21569hmmpanther:PTHR21569:SF1IntAct:Q8L6Z4InterPro:IPR000754
InterPro:IPR014721InterPro:IPR020568InterPro:IPR020574InterPro:IPR023035
KEGG:ath:AT3G49080KO:K02996ncoils:CoilOMA:NWEPDMR
PANTHER:PTHR21569Pfam:PF00380PhylomeDB:Q8L6Z4PROSITE:PS00360
Proteomes:UP000006548RefSeq:NP_190477.2scanprosite:PS00360SMR:Q8L6Z4
STRING:3702.AT3G49080.1SUPFAM:SSF54211TAIR:AT3G49080UniGene:At.35650
UniProt:Q8L6Z4
Coordinates (TAIR10) chr3:-:18194500..18196657
Molecular Weight (calculated) 47990.40 Da
IEP (calculated) 5.40
GRAVY (calculated) -0.77
Length 430 amino acids
Sequence (TAIR10)
(BLAST)
001: MLSRLFLRHS NLRFVTLVSS KSNSQIFSSF IRPLSTNSSG GGGNGDGNGR NRNDVPWSFT GVNDDKSGPF SSDDSFGSSG VAGSGLPGGE GKWPEEPKRW
101: NIKEEEEKVV FDTGGEVGQG IETSRERRGN EWEETKRWDM KEGEEKVVFG GGGDEVDGFG IRGEVKSNEW DVSKPWNLKE EEEGVVFDTG GEVPFSFENS
201: LEMAEEERVK KELIEKEEKE LLEVIKGPDR AFGDLIAKSG ITDEMLDSLI ALKDFQGVEG LPPLTEIENL RREKSSKKSS RAEIELQMQE DIAKARVRQV
301: DETGRAYGTG RRKCSIARVW IQPGEGKFQV NEKEFDVYFP MLDHRAALLR PLAETKTLGR WDIKCTVKGG GTTGQVGAIQ LGISRALQNW EPDMRTSLRA
401: AGFLTRDSRV VERKKPGKAK ARKSFQWVKR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)