AT3G49070.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:peroxisome 0.520 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF677) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF677); INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF677) (TAIR:AT3G19330.1); Has 169 Blast hits to 169 proteins in 18 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 0; Plants - 155; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:18192479..18193729 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47275.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.34 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.18 | ||||||||||||||||||||||||||||||||
| Length | 416 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGIKVSSKIK RILASTGYIP IFIFKYRYYF YFFYCKFARK FVTKKIIILK LSSIGTASGS SNPKDGADVD VREEYANAFR TESYNHFWTR VVQLSRKKSA 101: VSSSSSSPPI ESSSTSARLM SYRLFAHNLL DPDLNTITRI LDVSRVGRHT RTLLSDYFLE TANAFLLCTQ LLKNIHHLRS KYESLKPKFH SENHNSLALI 201: DQFTEISKWF DPFISSGSRI QLIRSGCLYL LKRLESRRDK TRAKLKLING LTHSSGLLVL ALTTTLIVTI ASHAFALFLA APTLLASQFK PAGLRNKLTK 301: TAARLDVAAK GTYILSRDLD TISRLVTRIN DEVNHVRAMA EFWVGRGSGR VRGSEEVARE LKRCEESFSE ELDELEEHIY LCFMTINRAR NLLVKEILDS 401: DDPPNCSFAP KSKKKL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)