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AT3G48990.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
peroxisome 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27122571 (2016): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AMP-dependent synthetase and ligase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: catalytic activity, AMP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: apoplast, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT4G05160.1); Has 84840 Blast hits to 77127 proteins in 3761 species: Archae - 1146; Bacteria - 54375; Metazoa - 3415; Fungi - 4706; Plants - 2571; Viruses - 1; Other Eukaryotes - 18626 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G48990-MONOMERBioGrid:9378BRENDA:6.2.1.8EC:6.2.1.8eggNOG:COG0318eggNOG:KOG1176EMBL:AF503762
EMBL:AL132967EMBL:AY050824EMBL:AY062759EMBL:AY088127EMBL:AY117254EMBL:BT003376EMBL:CP002686
EnsemblPlants:AT3G48990EnsemblPlants:AT3G48990.1entrez:824060GeneID:824060Genevisible:Q9SMT7GO:GO:0005524GO:GO:0005737
GO:GO:0009506GO:GO:0009507GO:GO:0009570GO:GO:0009735GO:GO:0010030GO:GO:0010214GO:GO:0033611
GO:GO:0046686GO:GO:0048046GO:GO:0050203GO:GO:0050832Gramene:AT3G48990.1hmmpanther:PTHR24095hmmpanther:PTHR24095:SF171
HOGENOM:HOG000229994InParanoid:Q9SMT7InterPro:IPR000873InterPro:IPR020845InterPro:IPR025110iPTMnet:Q9SMT7KEGG:ath:AT3G48990
OMA:RAPPEFQPaxDb:Q9SMT7Pfam:PF00501Pfam:PF13193Pfam:Q9SMT7PhylomeDB:Q9SMT7PIR:T46131
PRIDE:Q9SMT7PRO:PR:Q9SMT7PROSITE:PS00455ProteinModelPortal:Q9SMT7Proteomes:UP000006548RefSeq:NP_190468.1scanprosite:PS00455
SMR:Q9SMT7STRING:3702.AT3G48990.1SUPFAM:SSF56801TAIR:AT3G48990UniGene:At.19806UniProt:Q9SMT7
Coordinates (TAIR10) chr3:-:18159031..18161294
Molecular Weight (calculated) 55547.30 Da
IEP (calculated) 6.52
GRAVY (calculated) -0.12
Length 514 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSDTLSGLL ENVAKKFPDR RALSVSGKFN LTHARLHDLI ERAASRLVSD AGIKPGDVVA LTFPNTVEFV IMFLAVIRAR ATAAPLNAAY TAEEFEFYLS
101: DSDSKLLLTS KEGNAPAQEA ASKLKISHVT ATLLDAGSDL VLSVADSDSV VDSATELVNH PDDGALFLHT SGTTSRPKGV PLTQLNLASS VKNIKAVYKL
201: TESDSTVIVL PLFHVHGLLA GLLSSLGAGA AVTLPAAGRF SATTFWPDMK KYNATWYTAV PTIHQIILDR HASHPETEYP KLRFIRSCSA SLAPVILSRL
301: EEAFGAPVLE AYAMTEATHL MSSNPLPEEG PHKPGSVGKP VGQEMAILNE KGEIQEPNNK GEVCIRGPNV TKGYKNNPEA NKAGFEFGWF HTGDIGYFDT
401: DGYLHLVGRI KELINRGGEK ISPIEVDAVL LTHPDVSQGV AFGVPDEKYG EEINCAVIPR EGTTVTEEDI KAFCKKNLAA FKVPKRVFIT DNLPKTASGK
501: IQRRIVAQHF LEKP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)