suba logo
AT3G48970.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.916
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Heavy metal transport/detoxification superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: copper ion binding, metal ion binding; INVOLVED IN: copper ion transport, metal ion transport; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT3G56891.1); Has 948 Blast hits to 923 proteins in 65 species: Archae - 2; Bacteria - 55; Metazoa - 0; Fungi - 0; Plants - 888; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2608eggNOG:KOG1603EMBL:BT003822EMBL:BT005126EMBL:CP002686EnsemblPlants:AT3G48970EnsemblPlants:AT3G48970.1
entrez:824058GeneID:824058GO:GO:0030001GO:GO:0046872Gramene:AT3G48970.1hmmpanther:PTHR22814hmmpanther:PTHR22814:SF140
HOGENOM:HOG000234967InterPro:IPR006121KEGG:ath:AT3G48970OMA:PNLDCEGPfam:PF00403Pfscan:PS50846PhylomeDB:Q84K70
PROSITE:PS50846Proteomes:UP000006548RefSeq:NP_566913.1SMR:Q84K70STRING:3702.AT3G48970.1SUPFAM:SSF55008TAIR:AT3G48970
UniGene:At.35663UniProt:Q84K70
Coordinates (TAIR10) chr3:-:18152408..18153296
Molecular Weight (calculated) 15752.70 Da
IEP (calculated) 7.59
GRAVY (calculated) -0.42
Length 140 amino acids
Sequence (TAIR10)
(BLAST)
001: MSMTVEIRVP NLDCEGCASK LRKTLLKLKG VEEVEVEMET QKVTARGYRL EEKKVLKAVR RAGKAAELWP YRLGNSHFAS FYKYPSYVTN HYYSDAHRTD
101: PTGGVHTFFH TPADYSVAVA GDEIAASMFS DDNPHACTIM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)