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AT3G48950.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pectin lyase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: central cell, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT2G23900.1); Has 4179 Blast hits to 4160 proteins in 504 species: Archae - 6; Bacteria - 1499; Metazoa - 14; Fungi - 1097; Plants - 1422; Viruses - 0; Other Eukaryotes - 141 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G48950-MONOMERCAZy:GH28eggNOG:COG5434eggNOG:ENOG410J9WGEMBL:AL132967EMBL:CP002686EMBL:DQ056615
EnsemblPlants:AT3G48950EnsemblPlants:AT3G48950.1entrez:824056Gene3D:2.160.20.10GeneID:824056GO:GO:0004650GO:GO:0005576
GO:GO:0005975GO:GO:0016829GO:GO:0071555Gramene:AT3G48950.1hmmpanther:PTHR31339hmmpanther:PTHR31339:SF17HOGENOM:HOG000238076
InterPro:IPR000743InterPro:IPR006626InterPro:IPR011050InterPro:IPR012334KEGG:ath:AT3G48950OMA:QHILIRRPfam:PF00295
PhylomeDB:Q9SMT3PIR:T46135Proteomes:UP000006548RefSeq:NP_190464.1SMART:SM00710SMR:Q9SMT3STRING:3702.AT3G48950.1
SUPFAM:SSF51126TAIR:AT3G48950UniGene:At.53842UniProt:Q9SMT3
Coordinates (TAIR10) chr3:+:18148017..18149987
Molecular Weight (calculated) 51202.70 Da
IEP (calculated) 8.83
GRAVY (calculated) -0.07
Length 469 amino acids
Sequence (TAIR10)
(BLAST)
001: MIRPTFGLLV FLAIFLFPAI ESRSHRNSVT SKIEFSALNC RKHSAILTDF GAVGDGKTSN TKAFRNAISK LSQMATDGGA QLVVPPGKWL TGSFNLTSHF
101: TLFIQRGATI LASQDESEWP VIAPLPSYGK GRDGTGTGRF NSLISGTNLT DVVITGNNGT INGQGQYWWD KFKKKQFKIT RPYLIEILFS KNIQISNITL
201: IDSPSWNIHP VYCNSVIVKS VTVLAPVTVP NTDGINPDSC TNTLIEDCYI VSGDDCIAVK SGWDQYGIKF GMPTQQLSIR RLTCISPKSA GVALGSEMSG
301: GIKDVRIEDV TLTNTESAIR IKTAVGRGAY VKDIYARRIT MKTMKYVFWM SGNYGSHPDE GFDPKALPEI TNINYRDMTA ENVTMSASLD GIDKDPFTGI
401: CISNVTIALA AKAKKMQWNC TDVAGVTSRV TPEPCSLLPE KKAQAKNVDC AFPSDLIPIE SVVLKKCFL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)