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AT3G48940.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.683
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Remorin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Remorin family protein; CONTAINS InterPro DOMAIN/s: Remorin, C-terminal (InterPro:IPR005516), Remorin, N-terminal (InterPro:IPR005518); BEST Arabidopsis thaliana protein match is: Remorin family protein (TAIR:AT5G23750.2); Has 1837 Blast hits to 1261 proteins in 238 species: Archae - 1; Bacteria - 261; Metazoa - 152; Fungi - 115; Plants - 477; Viruses - 0; Other Eukaryotes - 831 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IX7MeggNOG:ENOG410YI71EMBL:AL132967EMBL:CP002686EnsemblPlants:AT3G48940EnsemblPlants:AT3G48940.1entrez:824055
GeneID:824055Gramene:AT3G48940.1hmmpanther:PTHR31775HOGENOM:HOG000239299InterPro:IPR005516InterPro:IPR005518KEGG:ath:AT3G48940
ncoils:CoilOMA:TEQMKNKPfam:PF03763Pfam:PF03766PhylomeDB:Q9SMT2PIR:T46136Proteomes:UP000006548
RefSeq:NP_190463.1STRING:3702.AT3G48940.1TAIR:AT3G48940UniGene:At.53841UniProt:Q9SMT2
Coordinates (TAIR10) chr3:-:18142863..18144163
Molecular Weight (calculated) 19678.60 Da
IEP (calculated) 9.75
GRAVY (calculated) -0.85
Length 175 amino acids
Sequence (TAIR10)
(BLAST)
001: MTLEEQKKVI MPEAVASEPS PPSKEEKSDD SKAIVLVVAA KEPTEDKKVG SVHRDAVLVR LEQDKRISLI KAWEEAEKSK VENKAQKKIS SVGAWENSKK
101: ASVEAELKKI EEQLNKKKAH YTEQMKNKIA QIHKEAEEKR AMTEAKRGED VLKAEEMAAK YRATGTAPTK LFGFF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)