suba logo
AT3G48890.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:23990937 (2013): plasma membrane
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22215637 (2012): plasma membrane
  • PMID:15322131 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : membrane-associated progesterone binding protein 3
Curator
Summary (TAIR10)
putative progesterone-binding protein homolog (Atmp2) mRNA,
Computational
Description (TAIR10)
membrane-associated progesterone binding protein 3 (MAPR3); FUNCTIONS IN: heme binding; LOCATED IN: chloroplast thylakoid membrane, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: membrane steroid binding protein 1 (TAIR:AT5G52240.1); Has 1079 Blast hits to 1069 proteins in 199 species: Archae - 0; Bacteria - 2; Metazoa - 428; Fungi - 337; Plants - 203; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).
Protein Annotations
BioGrid:9368eggNOG:ENOG4111UG0eggNOG:KOG1110EMBL:AF153283EMBL:AF419567EMBL:AL132963EMBL:AY079104
EMBL:CP002686EnsemblPlants:AT3G48890EnsemblPlants:AT3G48890.1entrez:824050Gene3D:3.10.120.10GeneID:824050Genevisible:Q9M2Z4
GO:GO:0005496GO:GO:0005634GO:GO:0005783GO:GO:0005886GO:GO:0009535GO:GO:0016021GO:GO:0020037
Gramene:AT3G48890.1hmmpanther:PTHR10281hmmpanther:PTHR10281:SF45HOGENOM:HOG000187840InParanoid:Q9M2Z4IntAct:Q9M2Z4InterPro:IPR001199
iPTMnet:Q9M2Z4KEGG:ath:AT3G48890KO:K17278OMA:PEVHRPRPaxDb:Q9M2Z4Pfam:PF00173Pfam:Q9M2Z4
PhylomeDB:Q9M2Z4PIR:T49285PRIDE:Q9M2Z4PRO:PR:Q9M2Z4ProteinModelPortal:Q9M2Z4Proteomes:UP000006548RefSeq:NP_190458.1
SMART:SM01117SMR:Q9M2Z4STRING:3702.AT3G48890.1SUPFAM:SSF55856TAIR:AT3G48890tair10-symbols:ATMAPR3tair10-symbols:ATMP2
tair10-symbols:MAPR3tair10-symbols:MSBP2TMHMM:TMhelixUniGene:At.24228UniProt:Q9M2Z4
Coordinates (TAIR10) chr3:+:18129669..18131353
Molecular Weight (calculated) 25383.60 Da
IEP (calculated) 4.26
GRAVY (calculated) -0.45
Length 233 amino acids
Sequence (TAIR10)
(BLAST)
001: MVQQIWETLK ETITAYTGLS PAAFFTVLAL AFAVYQVVSG FFVSPEVHRP RSLEVQPQSE PLPPPVQLGE ITEEELKLYD GSDSKKPLLM AIKGQIYDVS
101: QSRMFYGPGG PYALFAGKDA SRALAKMSFE DQDLTGDISG LGAFELEALQ DWEYKFMSKY VKVGTIQKKD GEGKESSEPS EAKTASAEGL STNTGEEASA
201: ITHDETSRST GEKIAETTEK KDVATDDDDA AKE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)