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AT3G48880.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.974
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RNI-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT4G11580.1); Has 401 Blast hits to 392 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 52; Fungi - 0; Plants - 349; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:9367eggNOG:ENOG410XQ54eggNOG:KOG1947EMBL:AL132963EMBL:AY045976EMBL:AY079352EMBL:AY088907
EMBL:CP002686EnsemblPlants:AT3G48880EnsemblPlants:AT3G48880.1EnsemblPlants:AT3G48880.2entrez:824049Gene3D:3.80.10.10GeneID:824049
Genevisible:Q9M2Z5Gramene:AT3G48880.1Gramene:AT3G48880.2hmmpanther:PTHR24006hmmpanther:PTHR24006:SF523HOGENOM:HOG000071014InParanoid:Q9M2Z5
IntAct:Q9M2Z5InterPro:IPR001810InterPro:IPR032675KEGG:ath:AT3G48880OMA:ACCDPILPaxDb:Q9M2Z5Pfam:PF12937
Pfam:Q9M2Z5PhylomeDB:Q9M2Z5PIR:T49284PRIDE:Q9M2Z5PRO:PR:Q9M2Z5ProteinModelPortal:Q9M2Z5Proteomes:UP000006548
RefSeq:NP_190457.1RefSeq:NP_850671.1SMR:Q9M2Z5STRING:3702.AT3G48880.1SUPFAM:SSF52047SUPFAM:SSF81383TAIR:AT3G48880
UniGene:At.1388UniProt:Q9M2Z5
Coordinates (TAIR10) chr3:+:18127873..18129008
Molecular Weight (calculated) 36064.20 Da
IEP (calculated) 8.60
GRAVY (calculated) -0.20
Length 309 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEEYESRRL RRWEELDTDI LVRIFQKFSV FELTSGLAHV CRGWRAACCD PILWKTVDLS NMRSSFIKIP LEPYVYVERR SDEALTRILK LSMNLSGGST
101: RTLIFHFNLF LSDDQLTYTA ERCPGLRRVV LPAWNRIKKT GICKAIRIWK DLESLTMPSI ANPPYLLTEI AKNCKNFKEL KIMGPFEVFF ANTLITCLPN
201: IKTLSIRCSA IKREALMKIL DGLPSLEVLN ISHSHLVEYS GWQPQQKVIV RELDKTIMEK TARLKKFLTC MDHKTCVMCQ RTENDEGIVR WYKYEEGDWK
301: VDEVSSLHL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)