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AT3G48870.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:22923678 (2012): plastid
  • PMID:21531424 (2011): plastid
  • PMID:21433285 (2011): plasma membrane
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14671022 (2004): mitochondrion
  • PMID:12938931 (2003): plastid
FP Images

Arabidopsis cell culture (mitochondrial marker)

At3g48870-GFP
(full-length)
mitochondrial marker-RFPoverlay

Images by Sandra Tanz

Arabidopsis cell culture (plastidal marker)

At3g48870-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Clp ATPase
Curator
Summary (TAIR10)
Encodes a nuclear encoded protein with similarity to Clpa regulatory subunit of CLP protease complex. The protein is localized to the chloroplast stroma. May function redundantly with TIC complex in chloroplast protein import.
Computational
Description (TAIR10)
HSP93-III; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein import into chloroplast stroma, chloroplast organization; LOCATED IN: in 7 components; EXPRESSED IN: guard cell, leaf; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA+ type, core (InterPro:IPR003593), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), UvrB/UvrC protein (InterPro:IPR001943), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: CLPC homologue 1 (TAIR:AT5G50920.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G48870-MONOMERBioCyc:ARA:GQT-2605-MONOMERBioGrid:9366EC:3.6.1.3eggNOG:COG0542eggNOG:KOG1051EMBL:AB022324
EMBL:AL132963EMBL:AY056787EMBL:CP002686EnsemblPlants:AT3G48870EnsemblPlants:AT3G48870.1entrez:824048ExpressionAtlas:Q9SXJ7
Gene3D:1.10.1780.10Gene3D:3.40.50.300GeneID:824048Genevisible:Q9SXJ7GO:GO:0005524GO:GO:0005739GO:GO:0009507
GO:GO:0009532GO:GO:0009536GO:GO:0009570GO:GO:0009658GO:GO:0009941GO:GO:0016020GO:GO:0016887
GO:GO:0019538GO:GO:0031969GO:GO:0034214GO:GO:0042803GO:GO:0045037hmmpanther:PTHR11638hmmpanther:PTHR11638:SF119
HOGENOM:HOG000218210InParanoid:Q9SXJ7IntAct:Q9SXJ7InterPro:IPR001270InterPro:IPR001943InterPro:IPR003593InterPro:IPR003959
InterPro:IPR004176InterPro:IPR018368InterPro:IPR019489InterPro:IPR027417InterPro:IPR028299ncoils:CoilOMA:HNNSEAV
PaxDb:Q9SXJ7Pfam:PF00004Pfam:PF02151Pfam:PF02861Pfam:PF07724Pfam:PF10431Pfam:Q9SXJ7
Pfscan:PS50151PhylomeDB:Q9SXJ7PIR:T49283PIR:T52456PRIDE:Q9SXJ7PRINTS:PR00300PRO:PR:Q9SXJ7
PROSITE:PS00870PROSITE:PS00871PROSITE:PS50151ProteinModelPortal:Q9SXJ7Proteomes:UP000006548RefSeq:NP_566912.2scanprosite:PS00870
scanprosite:PS00871SMART:SM00382SMART:SM01086SMR:Q9SXJ7STRING:3702.AT3G48870.1SUPFAM:SSF52540SUPFAM:SSF81923
SwissPalm:Q9SXJ7TAIR:AT3G48870tair10-symbols:ATCLPCtair10-symbols:ATHSP93-IIItair10-symbols:HSP93-IIITCDB:3.A.9.1.2UniGene:At.23421
UniProt:Q9SXJ7
Coordinates (TAIR10) chr3:-:18122363..18126008
Molecular Weight (calculated) 105746.00 Da
IEP (calculated) 6.35
GRAVY (calculated) -0.31
Length 952 amino acids
Sequence (TAIR10)
(BLAST)
001: MAWSIALLTP PFFGPGRHVQ AKEYREPRGC VMKMSSLKAP VLRIQATEYR EPRGRVKMMS SLQAPLLTIQ SFSGLRAPSA LDYLGRPSPG FLVKYKLAKS
101: SGREKASRCV PKAMFERFTE KAIKVIMLSQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DSRVEVEKII GRGSGFVAVE IPFTPRAKRV
201: LELSLEEARQ LGHNYIGSEH LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTASVGGGSS GNSKMPTLEE YGTNLTKLAE EGKLDPVVGR
301: QPQIERVVQI LARRTKNNPC LIGEPGVGKT AIAEGLAQRI ASGDVPETIE GKTVITLDMG LLVAGTKYRG EFEERLKKLM EEIRQSDEII LFIDEVHTLI
401: GAGAAEGAID AANILKPALA RGELQCIGAT TIDEYRKHIE KDPALERRFQ PVKVPEPTVE EAIQILQGLR ERYEIHHKLR YTDEALVAAA QLSHQYISDR
501: FLPDKAIDLI DEAGSRVRLR HAQLPEEARE LEKQLRQITK EKNEAVRSQD FEMAGSHRDR EIELKAEIAN VLSRGKEVAK AENEAEEGGP TVTESDIQHI
601: VATWTGIPVE KVSSDESSRL LQMEQTLHTR VIGQDEAVKA ISRAIRRARV GLKNPNRPIA SFIFSGPTGV GKSELAKALA AYYFGSEEAM IRLDMSEFME
701: RHTVSKLIGS PPGYVGYTEG GQLTEAVRRR PYTLVLFDEI EKAHPDVFNM MLQILEDGRL TDSKGRTVDF KNTLLIMTSN VGSSVIEKGG RRIGFDLDHD
801: EKDSSYNRIK SLVTEELKQY FRPEFLNRLD EMIVFRQLTK LEVKEIADIM LKEVVARLEV KEIELQVTER FKERVVDEGF DPSYGARPLR RAIMRLLEDS
901: MAEKMLSRDI KEGDSVIVDV DAEGSVVVLS GTTGRVGGFA AEEAMEDPIP IL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)