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AT3G48810.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (mitochondrial marker)

At3g48810-GFP (AA 1-100)mitochondrial marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G64320.1); Has 54952 Blast hits to 14329 proteins in 303 species: Archae - 3; Bacteria - 55; Metazoa - 756; Fungi - 902; Plants - 51480; Viruses - 0; Other Eukaryotes - 1756 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AL132963EMBL:CP002686EnsemblPlants:AT3G48810EnsemblPlants:AT3G48810.1entrez:824042
Gene3D:1.25.40.10GeneID:824042Genevisible:Q9M302Gramene:AT3G48810.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF269HOGENOM:HOG000241196
InParanoid:Q9M302InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT3G48810OMA:KALCKNNPaxDb:Q9M302Pfam:PF01535
Pfam:PF12854Pfam:PF13041Pfam:PF13812Pfam:Q9M302Pfscan:PS51375PhylomeDB:Q9M302PIR:T49277
PRIDE:Q9M302PRO:PR:Q9M302PROSITE:PS51375ProteinModelPortal:Q9M302Proteomes:UP000006548RefSeq:NP_190450.1SMR:Q9M302
STRING:3702.AT3G48810.1SUPFAM:SSF81901TAIR:AT3G48810TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.53839UniProt:Q9M302
Coordinates (TAIR10) chr3:+:18097048..18099027
Molecular Weight (calculated) 74191.80 Da
IEP (calculated) 7.81
GRAVY (calculated) 0.04
Length 659 amino acids
Sequence (TAIR10)
(BLAST)
001: MYLKEGCSLL LKVQKPLIPF VLNTNLNVNH LLTESPNHAE IKELDVVKRL RQESCVPLAL HFFKSIANSN LFKHTPLTFE VMIRKLAMDG QVDSVQYLLQ
101: QMKLQGFHCS EDLFISVISV YRQVGLAERA VEMFYRIKEF GCDPSVKIYN HVLDTLLGEN RIQMIYMVYR DMKRDGFEPN VFTYNVLLKA LCKNNKVDGA
201: KKLLVEMSNK GCCPDAVSYT TVISSMCEVG LVKEGRELAE RFEPVVSVYN ALINGLCKEH DYKGAFELMR EMVEKGISPN VISYSTLINV LCNSGQIELA
301: FSFLTQMLKR GCHPNIYTLS SLVKGCFLRG TTFDALDLWN QMIRGFGLQP NVVAYNTLVQ GFCSHGNIVK AVSVFSHMEE IGCSPNIRTY GSLINGFAKR
401: GSLDGAVYIW NKMLTSGCCP NVVVYTNMVE ALCRHSKFKE AESLIEIMSK ENCAPSVPTF NAFIKGLCDA GRLDWAEKVF RQMEQQHRCP PNIVTYNELL
501: DGLAKANRIE EAYGLTREIF MRGVEWSSST YNTLLHGSCN AGLPGIALQL VGKMMVDGKS PDEITMNMII LAYCKQGKAE RAAQMLDLVS CGRRKWRPDV
601: ISYTNVIWGL CRSNCREDGV ILLERMISAG IVPSIATWSV LINCFILDDI VRAHDQFTI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)