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AT3G48710.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DEK domain-containing chromatin associated protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DEK domain-containing chromatin associated protein; CONTAINS InterPro DOMAIN/s: DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: DEK domain-containing chromatin associated protein (TAIR:AT5G63550.2); Has 53243 Blast hits to 30328 proteins in 1615 species: Archae - 67; Bacteria - 9231; Metazoa - 21090; Fungi - 5394; Plants - 2191; Viruses - 327; Other Eukaryotes - 14943 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IT09eggNOG:ENOG410XTU9EMBL:AK229931EMBL:AK229982EMBL:AK230134EMBL:AL133315EMBL:BT029155
EMBL:CP002686EnsemblPlants:AT3G48710EnsemblPlants:AT3G48710.1entrez:824032Gene3D:1.10.10.60GeneID:824032GO:GO:0003677
Gramene:AT3G48710.1hmmpanther:PTHR13468hmmpanther:PTHR13468:SF6InterPro:IPR009057InterPro:IPR014876KEGG:ath:AT3G48710KO:K17046
ncoils:CoilOMA:CPKATRDPfam:PF08766PhylomeDB:Q9SMM8PIR:T46215Proteomes:UP000006548RefSeq:NP_190440.1
SMR:Q9SMM8STRING:3702.AT3G48710.1SUPFAM:0042580TAIR:AT3G48710UniGene:At.35692UniProt:Q9SMM8
Coordinates (TAIR10) chr3:+:18041024..18043995
Molecular Weight (calculated) 52070.10 Da
IEP (calculated) 9.39
GRAVY (calculated) -1.30
Length 462 amino acids
Sequence (TAIR10)
(BLAST)
001: MATETLELKT PQLADTVAVT EKDTETKKKD EVEKDEAMEE KGEEIDGEKV KSPVTPVSER PIRERKRTGR YVIDTPPRSS GNKPLSITQG RGTRLKEIPN
101: VAYKLSKRKP DDNLFLLHTI LYGKKAKAQM LKKNIGQFSG FVWSEQEEEK QRAKAKEKLD KCIKEKLIDF CDVLDIPVNK STVKKEELAV RVLEFLVCPK
201: ATRDILLADS EKETKKRKKS TSKNVTSGES SHVPAKRRRQ AKKQEQPTET EGNGESDVGS EGTNDSNGED DVAPEEENNK SEDTETEDEK DKAKEKTKST
301: DKKRLSKRTK KEKPAAEEEK SIKGSAKSSR KSFRQVDKST TSSSKKQKVD KDDSSKEKGK TQTSKPQAKG SKDQGQSRKK GKKEPTRKEL HVVVTKILKE
401: VDFNTATLSD ILRKLGSHFG IDLMHRKAEV KDIITDAINE MSDDDDEKEE DTEDEGEKEG KD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)